Amsterdam UMC Hematology Department ┣━━ 📦 Open Source Packages ┃ ┣━━ MSGMM - Multi-sample Gaussian mixture models ┃ ┗━━ CytoTools - Internal R utilities package for cytometry data ┣━━ 🔬 Manuscripts ┃ ┣━━ imputation-manuscript - Imputation of cytometry data (Mocking et al., 2023) ┃ ┣━━ cMRD-manuscript - Computational MRD assessment in AML (Mocking et al., 2024) ┃ ┗━━ cMRD-review - Review of computational MRD assessment in AML (Mocking et al., 2025) ┗━━ 👨💻 Contributors ┣━━ 👨💻 Postdoctoral scientists ┃ ┗━━ Costa Bachas - Postdoc ┣━━ 👨💻 PhD students ┃ ┣━━ Tim Mocking - Computational analysis of myeloid malignancies ┃ ┣━━ Tom Reuvekamp - Therapy dependent leukemic stem cell dynamics in acute myeloid leukemia ┃ ┣━━ Lukas Haaksma - Advanced measurable residual disease modeling in acute myeloid leukemia ┃ ┣━━ Kasper Croese - Computational analysis of myeloid malignancies ┃ ┗━━ Nils Evander - Drug resistance modeling in acute leukemia ┣━━ 👨💻 Students ┃ ┣━━ Marry Lin - Intern MSc. Biomedical Sciences ┃ ┗━━ Felix Zwolle - Intern MSc. Bioinformatics ┗━━ 👨💻 Alumni ┣━━ Eirini Papavasileiou - Intern MSc. Bioinformatics ┣━━ Lok Lam Ngai - PhD student ┣━━ Jesse Tettero - PhD student ┣━━ Philip Rutten - Postdoc ┣━━ Dana Allen - Intern MSc. Bioinformatics ┗━━ Yejin Park - Intern MSc. Bioinformatics
Amsterdam UMC Hematology Department
Code and resources from the Hematology Department at Amsterdam UMC
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imputation-manuscript
imputation-manuscript PublicThis repository contains the code used in our benchmark of imputation tools for flow cytometry data.
Jupyter Notebook 1
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cMRD-manuscript
cMRD-manuscript PublicCode used for computational detection of MRD in AML using flow cytometry data.
Jupyter Notebook 1
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cMRD-review
cMRD-review PublicSimulated example of computational measurable residual disease detection in acute myeloid leukemia.
Jupyter Notebook
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SCD-PBMC-manuscript
SCD-PBMC-manuscript PublicIn-depth immunoprofiling of sickle cell disease (SCD) patients by computational flow cytometry analysis.
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Showing 7 of 7 repositories
- cMRD-review Public
Simulated example of computational measurable residual disease detection in acute myeloid leukemia.
AUMC-HEMA/cMRD-review’s past year of commit activity - MSGMM Public
The multi-sample Gaussian mixture model (MSGMM) is a clustering model adapted to fitting multiple samples simultaneously using the EM algorithm.
AUMC-HEMA/MSGMM’s past year of commit activity - SCD-PBMC-manuscript Public
In-depth immunoprofiling of sickle cell disease (SCD) patients by computational flow cytometry analysis.
AUMC-HEMA/SCD-PBMC-manuscript’s past year of commit activity - .github Public
AUMC-HEMA/.github’s past year of commit activity - CytoTools Public
A small R package containing useful R functions for cytometry data for internal use.
AUMC-HEMA/CytoTools’s past year of commit activity - cMRD-manuscript Public
Code used for computational detection of MRD in AML using flow cytometry data.
AUMC-HEMA/cMRD-manuscript’s past year of commit activity - imputation-manuscript Public
This repository contains the code used in our benchmark of imputation tools for flow cytometry data.
AUMC-HEMA/imputation-manuscript’s past year of commit activity
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