Resolve dependencies refresh #153
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name: Notebooks | |
on: | |
pull_request: | |
branches: | |
- master | |
jobs: | |
run_notebooks: | |
name: Notebook runner | |
strategy: | |
matrix: | |
os: ["ubuntu-latest"] | |
python-version: ["3.8"] | |
fail-fast: false | |
runs-on: ${{ matrix.os }} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install | |
run: | | |
pip install -r requirements.txt | |
pip install -r dev_requirements.txt | |
pip install -r notebook_requirements.txt | |
pip install . | |
ipython kernel install --name "python3" --user | |
- name: Run notebooks | |
run: | | |
python -m allensdk.internal.notebooks.execute_notebooks \ | |
--notebooks_dir doc_template/examples_root/examples/nb \ | |
--skip_notebooks behavior_ophys_session.ipynb | |
- name: Commit and push updated notebooks | |
uses: stefanzweifel/git-auto-commit-action@v4 | |
with: | |
commit_message: Update notebooks | |
push_options: --force | |
file_pattern: '*.ipynb' |