BUISCIII/buisciii-tools v2.2.9

Credits

• Victor Lopez
• Alejandro Bernabeu
• Juan Ledesma

Template fixes and updates

• Updated create_summary_report.sh to properly handle single end reads #509.
• Fix relative path handling in snpeff/snpsift annotation #509.
• Added sed to lablog_bam2fq so that _R1.bam is removed and the variable sample is created properly for those sample ids having several underscores (i.e. EPI_ISL_666)#490
• Update IRMA 99-stats lablog to raise Error if taxprofiler results are missing #515.
• Added a new lablog to create a .csv file for software versions in IRMA's template #514.
• Fixed wrong variable definition in IRMA's 99-stats lablog and added Nextclade's info into viralrecon's create_summary_report.sh script to be added into the mapping_illumina report #518.
• Added virus_sequence variable into IRMA's 99-stats lablog for the creation of the summary stats report #519.

Modules

Added enhancements

Fixes

Changed

Removed