Skip to content

Issues: BayraktarLab/cell2location

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

99 Open 146 Closed
99 Open 146 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

RegressionModel use_gpu parameters not working question Further information is requested
#392 opened Nov 4, 2024 by Angel030331
4 tasks
3
Singularity container/tutorial compatability enhancement New feature or request
#391 opened Oct 25, 2024 by pear4321
1
Both data are on the same spatial transcriptome slice question Further information is requested
#389 opened Oct 11, 2024 by GLking123
7
How do I set up multi-GPU parallel training? question Further information is requested
#388 opened Oct 10, 2024 by noob000007
2
Reference data: normalized or not question Further information is requested
#386 opened Oct 3, 2024 by Dillon214
1
Compatibility issues with scvi-tools bug Something isn't working
#385 opened Sep 25, 2024 by ori-kron-wis
4
ValueError: Expected parameter loc (Parameter of shape (23, 1)) of distribution Normal(loc: torch.Size([23, 1]), scale: torch.Size([23, 1])) to satisfy the constraint Real(), but found invalid values: question Further information is requested
#384 opened Sep 23, 2024 by chuangzhao0601
2
A question about N_cells_per_location question Further information is requested
#383 opened Sep 13, 2024 by beilouer
1
Inconsistence between N_cells_per_location and the deconvolution result question Further information is requested
#381 opened Sep 6, 2024 by thestarocean
Insight-question: Missing cell types & reliability of conditional expression-profiles question Further information is requested
#380 opened Aug 28, 2024 by floriankreten
Gene imputation question Further information is requested
#379 opened Aug 21, 2024 by wangjiawen2013
1
How to Visualization NMF coloc result? question Further information is requested
#378 opened Aug 14, 2024 by yifanfu01
Estimated cell type counts: adjusted for abundance or not? question Further information is requested
#377 opened Aug 12, 2024 by BaharehAjami
4
Using per-celltype counts for downstream analysis question Further information is requested
#376 opened Jul 30, 2024 by Dillon214
Performance issues on a large (120724) location dataset question Further information is requested
#375 opened Jul 13, 2024 by Dillon214
4
Using scATAC-seq dataset to deconvolute 10x Visium dataset question Further information is requested
#374 opened Jun 27, 2024 by Jadeapple
2
AttributeError: module 'cell2location' has no attribute 'run_c2l' bug Something isn't working
#373 opened Jun 20, 2024 by Lee-jiahao
"OutOfMemoryError: CUDA out of memory." in GPU mode question Further information is requested
#372 opened Jun 20, 2024 by asmlgkj
7
Variable N_cell_per_location Hyperparameter question Further information is requested
#370 opened Jun 11, 2024 by Kwasi-Scientist
How can I use cell2location output for downstream analysis in R Studio question Further information is requested
#369 opened Jun 3, 2024 by 532at
2
How do I find where run_colocation stores its results in adata? question Further information is requested
#368 opened Jun 3, 2024 by singhbhavya
1 of 4 tasks
an unexpected keyword argument 'summ_sc_data_args' bug Something isn't working
#367 opened Jun 3, 2024 by renyuan1988
2
"OutOfMemoryError: CUDA out of memory." in CPU mode? bug Something isn't working
#366 opened May 29, 2024 by Li-ZhiD
1
ELBO loss plot was empty bug Something isn't working
#361 opened May 5, 2024 by Donbbit
1
Regarding memory required for the first tutorial of cell2location question Further information is requested
#360 opened May 3, 2024 by sudeepthi5
2 of 4 tasks
2
ProTip! Add no:assignee to see everything that’s not assigned.