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Recurrent artifact in SOPHIA (v35) workflow 2.2.3_v1_0

Status: Open.

#10 In DKFZ-ODCF/SophiaWorkflow;

· naveedishaque opened on Sep 6, 2021

Refactor NF sophiaAnnotate task

Status: Open.

#9 In DKFZ-ODCF/SophiaWorkflow;

· vinjana opened on Dec 7, 2020

· 

Migrate to Nextflow

Remove temporary file handling from Nextflow task sophiaAnnotate

Status: Open.

#8 In DKFZ-ODCF/SophiaWorkflow;

· vinjana opened on Dec 7, 2020

· 

Migrate to Nextflow

Containerize

Status: Open.

#7 In DKFZ-ODCF/SophiaWorkflow;

· vinjana opened on Dec 7, 2020

· 

Migrate to Nextflow

Conda environment

Status: Open.

#6 In DKFZ-ODCF/SophiaWorkflow;

· vinjana opened on Dec 7, 2020

· 

Migrate to Nextflow

Port to Nextflow while keeping old jobs/tasks

Status: Open.

#5 In DKFZ-ODCF/SophiaWorkflow;

· vinjana opened on Dec 7, 2020

· 

Migrate to Nextflow