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| name: Run the tests | |
| on: [pull_request] | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-20.04 | |
| label: linux-64 | |
| prefix: /usr/share/miniconda3/envs/bionc | |
| - os: macos-latest | |
| label: osx-64 | |
| prefix: /Users/runner/miniconda3/envs/bionc | |
| - os: windows-latest | |
| label: win-64 | |
| prefix: C:\Miniconda3\envs\bionc | |
| name: ${{ matrix.label }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@master | |
| - name: Setup environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| activate-environment: bionc | |
| environment-file: environment.yml | |
| - name: Print mamba info | |
| run: | | |
| mamba config --show | |
| mamba info | |
| mamba list | |
| - name: Install extra dependencies | |
| run: mamba install pytest-cov pytest codecov coverage -cconda-forge | |
| - name: Run the actual tests on LINUX | |
| run: | | |
| sudo apt-get install xvfb | |
| xvfb-run --server-args="-screen 0 1024x768x24" pytest -v --color=yes --cov-report term-missing --cov=bionc tests | |
| if: matrix.label == 'linux-64' | |
| - name: Run the actual tests | |
| run: pytest -v --color=yes --cov-report=xml --cov=bionc tests | |
| if: matrix.label == 'osx-64' | |
| - name: Show current dir content with new .coverage file | |
| run: pwd; ls -a | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| flags: unittests | |
| fail_ci_if_error: true | |
| verbose: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: coverage.xml | |
| if: matrix.label == 'osx-64' | |
| - name: Test installed version of bioviz on LINUX | |
| run: | | |
| python setup.py install | |
| cd | |
| xvfb-run --server-args="-screen 0 1024x768x24" python -c "import bionc" | |
| if: matrix.label == 'linux-64' | |
| - name: Test installed version of bionc on WINDOWS and MAC | |
| run: | | |
| python setup.py install | |
| cd | |
| python -c "import bionc" | |
| if: matrix.label != 'linux-64' |