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metaboprep output file directory

David Hughes edited this page Dec 14, 2021 · 1 revision

directory structure made by metaboprep

after metaboprep is run the pipeline will write raw, filtered, and summary statistics to file, along with the html report, log file, and pdf file with figures and summary statistics for each meatbolite. The new directory structure will look like:

|--metaboprep_release_year_month_day
	|-filtered_data
	|	|-study_date_Filtered_feature_data.txt
	|	|-study_date_Filtered_metabolite_data.txt
	|	`-study_date_Filtered_sample_data.txt
	|
	|-raw_data
	|	|-study_date_feature_data.txt
	|	|-study_date_sample_data.txt
	|	|-study_date_tab1name_metabolite_data.txt
	|	`-study_date_tab2name_metabolite_data.txt
	|
	|-sumstats
	|	|-filtered_dataset
	|	|	|-study_date_feature_anno_sumstats.txt
	|	|	|-study_date_featuretree.Rdata
	|	|	|-study_date_pc_varexp.txt
	|	|	`-study_date_sample_anno_sumstats.txt
	|	|
	|	|-raw_dataset
	|		|-study_date_feature_anno_sumstats.txt
	|		|-study_date_featuretree.Rdata
	|		|-study_date_pc_varexp.txt
	|		`-study_date_sample_anno_sumstats.txt
	|	
	|-feature_distributions.pdf
	|-study_date_logfile.txt
	|-metaboprep_summary_report.html
	|-ReportData.Rdata
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