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metaboprep output file directory
David Hughes edited this page Dec 14, 2021
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after metaboprep is run the pipeline will write raw, filtered, and summary statistics to file, along with the html report, log file, and pdf file with figures and summary statistics for each meatbolite. The new directory structure will look like:
|--metaboprep_release_year_month_day
|-filtered_data
| |-study_date_Filtered_feature_data.txt
| |-study_date_Filtered_metabolite_data.txt
| `-study_date_Filtered_sample_data.txt
|
|-raw_data
| |-study_date_feature_data.txt
| |-study_date_sample_data.txt
| |-study_date_tab1name_metabolite_data.txt
| `-study_date_tab2name_metabolite_data.txt
|
|-sumstats
| |-filtered_dataset
| | |-study_date_feature_anno_sumstats.txt
| | |-study_date_featuretree.Rdata
| | |-study_date_pc_varexp.txt
| | `-study_date_sample_anno_sumstats.txt
| |
| |-raw_dataset
| |-study_date_feature_anno_sumstats.txt
| |-study_date_featuretree.Rdata
| |-study_date_pc_varexp.txt
| `-study_date_sample_anno_sumstats.txt
|
|-feature_distributions.pdf
|-study_date_logfile.txt
|-metaboprep_summary_report.html
|-ReportData.Rdata