update test to reflect it is now an output folder

NBISweden · Mar 5, 2024 · 1259216 · 1259216
1 parent f928bb4
commit 1259216
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/t/scripts_output.t b/t/scripts_output.t
@@ -238,22 +238,22 @@ $script = $script_prefix."bin/agat_sp_compare_two_annotations.pl";
 $result = "$output_folder/agat_sp_compare_two_annotations_1.txt";
 system(" $script --gff1 $input_folder/1.gff  --gff2 $input_folder/1.gff -o $outtmp 2>&1 1>/dev/null");
 #run test
-ok( system("diff $result $outtmp") == 0, "output $script");
-unlink $outtmp;
+ok( system("diff $result $outtmp/report.txt") == 0, "output $script");
+rmtree $outtmp;
 
 $script = $script_prefix."bin/agat_sp_compare_two_annotations.pl";
 $result = "$output_folder/agat_sp_compare_two_annotations_2.txt";
 system(" $script --gff1 $input_folder/agat_sp_compare_two_annotations/file1.gff  --gff2 $input_folder/agat_sp_compare_two_annotations/file2.gff -o $outtmp 2>&1 1>/dev/null");
 #run test
-ok( system("diff $result $outtmp") == 0, "output $script");
-unlink $outtmp;
+ok( system("diff $result $outtmp/report.txt") == 0, "output $script");
+rmtree $outtmp;
 
 $script = $script_prefix."bin/agat_sp_compare_two_annotations.pl";
 $result = "$output_folder/agat_sp_compare_two_annotations_3.txt";
 system(" $script --gff1 $input_folder/agat_sp_compare_two_annotations/file2.gff  --gff2 $input_folder/agat_sp_compare_two_annotations/file1.gff -o $outtmp 2>&1 1>/dev/null");
 #run test
-ok( system("diff $result $outtmp") == 0, "output $script");
-unlink $outtmp;
+ok( system("diff $result $outtmp/report.txt") == 0, "output $script");
+rmtree $outtmp;
 
 # --------check agat_sp_compare_two_BUSCOs.pl -------------