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Replace custom containers with seqera containers incl version upgrades #68

Replace custom containers with seqera containers incl version upgrades

Replace custom containers with seqera containers incl version upgrades #68

Triggered via pull request November 11, 2024 08:25
Status Failure
Total duration 7m 34s
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mitogenome_mapping.yaml

on: pull_request
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1 error and 5 warnings
test
Process completed with exit code 1.
test
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, conda-incubator/setup-miniconda@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Mambaforge is now deprecated!
Future Miniforge releases will NOT build Mambaforge installers. We advise you switch to Miniforge at your earliest convenience. More details at https://conda-forge.org/news/2024/07/29/sunsetting-mambaforge/.
test
/usr/share/miniconda3/lib/python3.12/site-packages/conda/cli/main_config.py:738: FutureWarning: Adding 'defaults' to channel list implicitly. is deprecated and will be removed in 25.3. In the future, defaults won't be added when 'conda config --add/--append channels' is used. If you depend on that behavior, run 'conda config --append channels defaults'. deprecated.topic(
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Mamba support is still experimental and can result in differently solved environments!
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/usr/share/miniconda3/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead. action(self, namespace, argument_values, option_string)