Add missing rules with increased runtime to slurm configuration files

NBISweden · Nov 6, 2024 · 6e7a885 · 6e7a885
1 parent 40d094c
commit 6e7a885
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diff --git a/config/slurm/profile/config_plugin_dardel.yaml b/config/slurm/profile/config_plugin_dardel.yaml
@@ -351,6 +351,10 @@ set-resources:
     runtime: 300
     mem_mb: 16000
     cpus_per_task: 16
+  build_snpEff_db:
+    runtime: 300
+  annotate_vcf:
+    runtime: 300
   outgroup_fastqc:
     runtime: 16
     mem_mb: 16000

diff --git a/config/slurm/profile/config_plugin_rackham.yaml b/config/slurm/profile/config_plugin_rackham.yaml
@@ -337,6 +337,10 @@ set-resources:
     runtime: 300
     mem_mb: 12800
     cpus_per_task: 2
+  build_snpEff_db:
+    runtime: 300
+  annotate_vcf:
+    runtime: 300
   outgroup_fastqc:
     runtime: 1440
     mem_mb: 12800