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Improve SQL for pool sample-label mapping #456

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Improve SQL for pool sample-label mapping

Improve SQL for pool sample-label mapping #456

Workflow file for this run

.github/workflows/lint-code.yml at f71dae6
name: Lint code
on: [push, pull_request]
jobs:
# Use ruff to check for code style violations
ruff-check:
runs-on: ubuntu-latest
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install ruff
- name: ruff --> Check for style violations
# Configured in pyproject.toml
run: ruff check .
# Use ruff to check code formatting
ruff-format:
runs-on: ubuntu-latest
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install ruff
- name: ruff --> Check code formatting
run: ruff format --check .
# Use mypy for static type checking
mypy-check:
runs-on: ubuntu-latest
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install mypy
- name: Run mypy and install stubs as needed
# Configured in pyprojet.toml
run: mypy --install-types --non-interactive .
# Use pip-check-reqs/pip-missing-reqs to check for missing dependencies
requirements-check:
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install pip-check-reqs
- name: Run pip-check-reqs/pip-missing-reqs
run: |
pip-missing-reqs .
# Use Prettier to check various file formats
prettier:
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Setup node
uses: actions/setup-node@v4
with:
node-version: "20"
- name: Install Prettier
run: npm install -g prettier
- name: Run Prettier --check
run: prettier --check .
# Use editorconfig to check all remaining file formats
editorconfig:
runs-on: ubuntu-latest
steps:
- name: Checkout repo
uses: actions/checkout@v4
- name: Setup node
uses: actions/setup-node@v4
with:
node-version: "20"
- name: Install editorconfig-checker
run: npm install -g editorconfig-checker
- name: editorconfig --> Lint files
run: editorconfig-checker $(git ls-files | grep -v '.py\|.md\|.json\|.yml\|.yaml\|.html')