The structure within Analysis is as follows:
R/ # functions used in analyses
Analysis/
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├── Code/ # analysis scripts used for generating figures
| ├── Data_handling.R
│ ├── Figure_2_WHO_Estimates_Of_Excess_Mortality/
│ ├── Figure_3_Burial_Registration_Patterns/
│ ├── Figure_4_Estimating_Excess_Mortality/
│ ├── Figure_5_Capturing_Patterns_Of_Transmission/
│ ├── Figure_6_Varying_Severity/
│ ├── SI/ # analysis scripts used for generating supplementary figures
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├── Data/
│ ├── raw_data/ # data obtained from elsewhere
│ └── derived_data/ # data generated during the analysis
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├── Figures/
├── Results/