Earlham Institute
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earlham-galaxytools
earlham-galaxytools PublicGalaxy tools and workflows developed at the Earlham Institute
Repositories
- grassroots-server-apache-httpd Public
The Apache httpd server module for the Grassroots infrastructure
TGAC/grassroots-server-apache-httpd’s past year of commit activity - COPO-production Public
COPO is a Django-based platform that serves as a metadata broker to describe research data per FAIR principles. It supports community-recognised metadata standards, ensuring data is discoverable, interoperable, and accessible. Submitted data is accessible via public repositories, promoting long-term preservation and reuse across systems.
TGAC/COPO-production’s past year of commit activity - COPO-schemas Public
This repository provides a collection of schemas, or data objects, for representing different types of metadata.
TGAC/COPO-schemas’s past year of commit activity - eisca Public
A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
TGAC/eisca’s past year of commit activity - COPO-documentation Public
COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.
TGAC/COPO-documentation’s past year of commit activity - Scraper_sc Public
This project automates the extraction of structured metadata from scientific papers in PDF format. Using the OpenAI GPT model, it populates a standardised Excel workbook with metadata for single-cell RNA-seq studies. Each PDF is parsed and its contents used to fill out the appropriate fields across multiple Excel sheets, one per metadata category.
TGAC/Scraper_sc’s past year of commit activity - SingleCellSchemas Public
For resources related to the EI Cellgen ISP, including metadata mappings and schemas for Single Cell Genomics and Spatial Transcriptomics experiments.
TGAC/SingleCellSchemas’s past year of commit activity
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