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    • A Grassroots service for storing the data for field trials
      C
      0200Updated Jul 15, 2025Jul 15, 2025
    • TGAC's Genome Browser
      JavaScript
      010133Updated Jul 14, 2025Jul 14, 2025
    • Dev Container for OpenNebula Administration (CLI + Ansible)
      Shell
      1000Updated Jul 14, 2025Jul 14, 2025
    • This repository provides a collection of schemas, or data objects, for representing different types of metadata.
      0100Updated Jul 14, 2025Jul 14, 2025
    • COPO is a Django-based platform that serves as a metadata broker to describe research data per FAIR principles. It supports community-recognised metadata standards, ensuring data is discoverable, interoperable, and accessible. Submitted data is accessible via public repositories, promoting long-term preservation and reuse across systems.
      JavaScript
      2200Updated Jul 14, 2025Jul 14, 2025
    • rfparser

      Public
      Parse ResearchFish publications to update CKAN
      Python
      0000Updated Jul 9, 2025Jul 9, 2025
    • eista

      Public
      A single-cell spatial transcriptomics pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
      Nextflow
      0000Updated Jul 7, 2025Jul 7, 2025
    • eisca

      Public
      A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
      Nextflow
      1120Updated Jul 7, 2025Jul 7, 2025
    • GitHub workflow to sync various repo mirrors
      2000Updated Jul 4, 2025Jul 4, 2025
    • COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.
      Python
      0202Updated Jul 4, 2025Jul 4, 2025
    • The Apache httpd server module for the Grassroots infrastructure
      C
      0000Updated Jul 3, 2025Jul 3, 2025
    • Repo contains scripts and links to Scoones et al: long-read scRNAseq transcriptomics comparison study
      R
      0000Updated Jul 3, 2025Jul 3, 2025
    • JavaScript
      10010Updated Jul 2, 2025Jul 2, 2025
    • COPO - ansible deployment
      0000Updated Jul 2, 2025Jul 2, 2025
    • This project automates the extraction of structured metadata from scientific papers in PDF format. Using the OpenAI GPT model, it populates a standardised Excel workbook with metadata for single-cell RNA-seq studies. Each PDF is parsed and its contents used to fill out the appropriate fields across multiple Excel sheets, one per metadata category.
      Python
      0000Updated Jun 17, 2025Jun 17, 2025
    • For resources related to the EI Cellgen ISP, including metadata mappings and schemas for Single Cell Genomics and Spatial Transcriptomics experiments.
      CSS
      0100Updated Jun 16, 2025Jun 16, 2025
    • FlowFI

      Public
      FlowFI is a python-based package for selecting important features for gating of flow cytometry events and analysis of these features.
      Python
      1000Updated Jun 15, 2025Jun 15, 2025
    • HTML
      0000Updated Jun 9, 2025Jun 9, 2025
    • A wrapper for the Grassroots DFW Field Trial Service to give a BrAPI interface
      C
      0000Updated May 23, 2025May 23, 2025
    • The core libraries of the Grassroots infratructure
      C
      0100Updated May 1, 2025May 1, 2025
    • HTML
      0000Updated May 1, 2025May 1, 2025
    • Scripts to manage the building of the different Grassroots infrastructure components
      Shell
      0000Updated Apr 28, 2025Apr 28, 2025
    • A Grassroots service for managing and querying various different plant accessions
      C
      0000Updated Apr 24, 2025Apr 24, 2025
    • HTML
      0000Updated Apr 15, 2025Apr 15, 2025
    • cvanmf

      Public
      (bi)crossvalidation for NMF rank selection, and visualisation/analysis tools
      Python
      2100Updated Apr 13, 2025Apr 13, 2025
    • JP_PhD

      Public
      Additional material for Jess Peers' PhD thesis
      0000Updated Apr 3, 2025Apr 3, 2025
    • R
      0000Updated Apr 1, 2025Apr 1, 2025
    • Galaxy tools and workflows developed at the Earlham Institute
      Python
      141473Updated Mar 31, 2025Mar 31, 2025
    • Aequatus

      Public
      Earlham Institute's Synteny Browser
      JavaScript
      07123Updated Mar 23, 2025Mar 23, 2025
    • Lucene engine customised for Grassroots data
      Java
      0000Updated Mar 17, 2025Mar 17, 2025