Health Impact of Realistic Consumable Availability Scenarios#1367

Merged

tamuri merged 126 commits intomasterfrom

sakshi/impact_of_consumable_scenarios

Jul 8, 2025

Commits on May 22, 2024

add script to prepare HHFA data for regression analysis
sm2511
committed
add scripts to run regression analysis
sm2511
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Commits on May 23, 2024

move file paths to main.R
sm2511
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Add script to generation regression-based predicted changes to availability
sm2511
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add predict.R to workflow
sm2511
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draft script to generate consumable availability scenarios
sm2511
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Commits on May 28, 2024

update consumable RF to include TLO-HHFA consumable mapping
sm2511
committed

Commits on May 29, 2024

updates to imputation
sm2511
committed

Commits on May 30, 2024

check that the dataframe contains all districts
sm2511
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temporary changes to revert
sm2511
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Commits on May 31, 2024

update 'regression_application' column
sm2511
committed

Commits on Jun 3, 2024

update interpolation methodology
sm2511
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Commits on Jun 4, 2024

add scenarios 6-8
sm2511
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update test for consumables availability ResourceFile
sm2511
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Commits on Jun 5, 2024

Commits on Jun 6, 2024

update the method of generating scenarios 6-8
sm2511
committed

Commits on Jun 10, 2024

Commits on Jun 11, 2024

update _process_consumables_data
sm2511
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update scenario for large run
sm2511
committed

Commits on Jun 13, 2024

add scenario analysis script
sm2511
committed

Commits on Jun 14, 2024

add figures showing mechanisms of impact
sm2511
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Commits on Jun 15, 2024

update figure legend to show cleaner scneario names
sm2511
committed
minor script cleaning
sm2511
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add heatmap aummarising consumable availability in the RF
sm2511
committed

Commits on Jun 22, 2024

remove line plots for mechanisms of impact
sm2511
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update total DALYs averted and total DALYs accrued figures
sm2511
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plot DALYs accrued by cause
sm2511
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Commits on Jun 23, 2024

Commits on Jun 24, 2024

update names of scenarios
sm2511
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update heatmap to only include two levels of care
sm2511
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Commits on Jun 25, 2024

fix average to only include 1a and 1b in the heatmap
sm2511
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Commits on Jun 28, 2024

update 'status quo' to 'actual'
sm2511
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Commits on Jul 10, 2024

get heatmaps for all scenarios
sm2511
committed

Commits on Sep 4, 2024

Merge remote-tracking branch 'origin/master' into sakshi/impact_of_consumable_scenarios
sakshimohan
committed
update paths from dropbox to sharepoint
sakshimohan
committed
Clean code for assigning consumable category
sakshimohan
committed

Commits on Sep 5, 2024

Rename item category column and extract into consumable availability RF
sakshimohan
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Add 'item_category' to the function to check format of consumable availability RF
sakshimohan
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remove reindex() line because this is performed earlier in the script
sakshimohan
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removed these scripts which are not being used in the TLO model
sakshimohan
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Drop columns not needed from RF_items_and_packages
sakshimohan
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Merge branch 'sakshi/sharepoint_update_for_consumables_RF' into sakshi/impact_of_consumable_scenarios
sakshimohan
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load 'item_category' directly from the small consumables RF
sakshimohan
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update df name for readability
sakshimohan
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Commits on Sep 6, 2024

add HHFA proxies for two more TLO model consumables
sakshimohan
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add scenario 9 (level 2 increased to 99th percentile)
sakshimohan
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Commits on Sep 10, 2024

add parallel supply chain scenarios
sakshimohan
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add heatmaps to represent scenarios
sakshimohan
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add scenarios to simulation file
sakshimohan
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add new scenarios to consumables.py
sakshimohan
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add new scenarios to healthsystem.py
sakshimohan
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[TEMPORARY] remove item_category
sakshimohan
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Revert "Drop columns not needed from RF_items_and_packages"
sakshimohan
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Commits on Sep 11, 2024

update scenario for local run
sakshimohan
committed

Commits on Sep 12, 2024

Remove item_category from RF_small and move to RF_designations
sakshimohan
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add item_category from RF_designations
sakshimohan
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update scenario file for local run
sakshimohan
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add description of scenarios
sakshimohan
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minor update to correct direction of mapping
sakshimohan
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update scenario to submit to Azure
sakshimohan
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Commits on Sep 17, 2024

minor changes to figures + allow new results to be loaded
sakshimohan
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minor changes to figures
sakshimohan
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Explicitly specify colours for each scenario
sakshimohan
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drop the DHO scenario
sakshimohan
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rename columns for df_for_plot and streamline the choice of scenarios for all plots
sakshimohan
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Commits on Sep 19, 2024

update figures for think tank presentation
sakshimohan
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Commits on Sep 26, 2024

Update scenarios 10-12 to apply max conditions as necessary
sakshimohan
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update bar plot
sakshimohan
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update bar plot
sakshimohan
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Commits on Oct 20, 2024

update scenarios 6-9 so that availability is max(original availability, new availability based on target percentile)
sakshimohan
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Merge remote-tracking branch 'origin/master' into sakshi/impact_of_consumable_scenarios
sakshimohan
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add scenarios 9-12 to test_consumables.py
sakshimohan
committed

Commits on Nov 15, 2024

correct num_dalys plots to account for median rather than mean values
sakshimohan
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update DALYs averted plot to add heatmap of average consumable availability on top
sakshimohan
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correct resourcefilepath
sakshimohan
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Commits on Jan 15, 2025

add items 1237, 1239, 2678, and 1124 to consumables RFs (include Fansidar and Rifapentine)
sakshimohan
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added item code 75 (Gauze)
sakshimohan
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Commits on Jan 16, 2025

add detailed heatmaps for actual and 75th percentile scenarios for costing paper
sakshimohan
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Commits on Jan 17, 2025

Commits on Jan 21, 2025

edit axis titles
sakshimohan
committed

Commits on Jan 24, 2025

update heatmap figures so that average availability across rows is based on the mean from the full dataframe rather than the summarised dataframe
sakshimohan
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Commits on Mar 10, 2025

add heatmaps for ROI paper
sakshimohan
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Commits on Mar 19, 2025

minor changes to consumables heatmap for ROI manuscript
sakshimohan
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Commits on Apr 9, 2025

Clean plot for costing manuscript
sakshimohan
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Commits on Apr 11, 2025

Commits on Apr 15, 2025

add plots for the new HIV strategies
sakshimohan
committed

Commits on Apr 16, 2025

Create README.md
sakshimohan
authored

Commits on May 6, 2025

Commits on Jun 5, 2025

extract small file showing the ratio of consumables inflow to outflow
sakshimohan
committed

Commits on Jun 11, 2025

update small file showing the ratio of consumables inflow to outflow to drop month column
sakshimohan
committed

Commits on Jun 18, 2025

Update Resource Files after re-running consumable_availability_estimation.py and generate_consumable_availability_scenarios_for_impact_analysis.py
sakshimohan
committed

Commits on Jun 26, 2025

Merge branch 'master' into sakshi/impact_of_consumable_scenarios
tbhallett
committed

Commits on Jun 28, 2025

linting
tbhallett
committed

Commits on Jul 7, 2025