- Adds a wrapper for
RNARedPrint
calldRPSampler
which has a similar interface to theRNAblueprint
DependencyGraphMT
object. - Adds
design-redprint-multistate.py
for boltzmann weighted sampling using RNARedPrint and multi-dimensional boltzmann sampling. Please cite the preprint: https://arxiv.org/abs/1804.00841 - Adds
design-energyshift.py
to target exact target energies for the specified input structures, also by using multi-dimensional boltzmann sampling. cite preprint: https://arxiv.org/abs/1804.00841 - Adds wrapper functions and a Design subclass for
Hotknots
(http://www.mybiosoftware.com/hotknots-2-0-predict-secondary-structures-rna-pseudoknots.html) - Adds wrapper functions and a Design subclass for
pKiss
(https://bibiserv.cebitec.uni-bielefeld.de/pkiss) - Adds a structure class to represent and manipulate an RNA secondary structure
- Bug fixes