updating barcodes and metadata

andersen-lab · Sep 11, 2024 · 258898f · 258898f
1 parent 0b6d1fc
commit 258898f
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diff --git a/freyja/data/last_barcode_update.txt b/freyja/data/last_barcode_update.txt
@@ -1 +1 @@
-09_08_2024-01-36
+09_11_2024-01-35
diff --git a/freyja/data/lineage_mutations.json b/freyja/data/lineage_mutations.json
@@ -236292,133 +236292,6 @@
         "C28958A",
         "A29510C"
     ],
-    "LU.2.1.1": [
-        "C241T",
-        "T670G",
-        "C875T",
-        "C897A",
-        "C2790T",
-        "C3037T",
-        "G3431T",
-        "T3565C",
-        "G4184A",
-        "C4321T",
-        "C5826T",
-        "A6183G",
-        "A7842G",
-        "C8293T",
-        "G8393A",
-        "C9344T",
-        "A9424G",
-        "C9534T",
-        "C10029T",
-        "C10198T",
-        "G10447A",
-        "C10449A",
-        "G11042T",
-        "G11727A",
-        "C12789T",
-        "C12815T",
-        "C12880T",
-        "T13339C",
-        "C14408T",
-        "C15714T",
-        "T15756A",
-        "C17410T",
-        "A18163G",
-        "A18492G",
-        "C18894T",
-        "C19955T",
-        "A20055G",
-        "T20865C",
-        "C21618T",
-        "C21622T",
-        "G21624C",
-        "C21711T",
-        "T21740C",
-        "G21941T",
-        "T22032C",
-        "C22033A",
-        "A22034G",
-        "C22088T",
-        "A22108C",
-        "T22200G",
-        "C22208T",
-        "C22295A",
-        "C22353A",
-        "A22556G",
-        "G22577C",
-        "G22578A",
-        "G22599C",
-        "A22629C",
-        "C22674T",
-        "T22679C",
-        "C22686T",
-        "A22688G",
-        "G22770A",
-        "G22775A",
-        "A22786C",
-        "G22813T",
-        "T22882G",
-        "G22895C",
-        "T22896A",
-        "G22898A",
-        "A22910G",
-        "C22916T",
-        "T22917G",
-        "T22926C",
-        "T22928C",
-        "T22942A",
-        "G22992A",
-        "C22995A",
-        "T23005A",
-        "G23012A",
-        "T23018C",
-        "T23019C",
-        "A23055G",
-        "A23063T",
-        "T23075C",
-        "G23222A",
-        "C23271T",
-        "A23403G",
-        "C23423T",
-        "C23525T",
-        "T23599G",
-        "C23604G",
-        "C23625T",
-        "C23854A",
-        "G23948T",
-        "C24378T",
-        "A24424T",
-        "T24469A",
-        "C24990T",
-        "C25000T",
-        "C25207T",
-        "C25584T",
-        "A25758T",
-        "C26060T",
-        "C26270T",
-        "G26529C",
-        "C26577G",
-        "A26610G",
-        "C26681T",
-        "G26709A",
-        "C26833T",
-        "C26858T",
-        "A27259C",
-        "G27382C",
-        "A27383T",
-        "T27384C",
-        "C27807T",
-        "T27810C",
-        "A28271T",
-        "C28311T",
-        "G28881A",
-        "G28882A",
-        "G28883C",
-        "C28958A",
-        "A29510C"
-    ],
     "KR.4.1": [
         "C241T",
         "T670G",
@@ -244987,6 +244860,133 @@
         "C29416A",
         "A29510C"
     ],
+    "LU.2.1.1": [
+        "C241T",
+        "T670G",
+        "C875T",
+        "C897A",
+        "C2790T",
+        "C3037T",
+        "G3431T",
+        "T3565C",
+        "G4184A",
+        "C4321T",
+        "C5826T",
+        "A6183G",
+        "A7842G",
+        "C8293T",
+        "G8393A",
+        "C9344T",
+        "A9424G",
+        "C9534T",
+        "C10029T",
+        "C10198T",
+        "G10447A",
+        "C10449A",
+        "G11042T",
+        "G11727A",
+        "C12789T",
+        "C12815T",
+        "C12880T",
+        "T13339C",
+        "C14408T",
+        "C15714T",
+        "T15756A",
+        "C17410T",
+        "A18163G",
+        "A18492G",
+        "C18894T",
+        "C19955T",
+        "A20055G",
+        "T20865C",
+        "C21618T",
+        "C21622T",
+        "G21624C",
+        "C21711T",
+        "T21740C",
+        "G21941T",
+        "T22032C",
+        "C22033A",
+        "A22034G",
+        "C22088T",
+        "A22108C",
+        "T22200G",
+        "C22208T",
+        "C22295A",
+        "C22353A",
+        "A22556G",
+        "G22577C",
+        "G22578A",
+        "G22599C",
+        "A22629C",
+        "C22674T",
+        "T22679C",
+        "C22686T",
+        "A22688G",
+        "G22770A",
+        "G22775A",
+        "A22786C",
+        "G22813T",
+        "T22882G",
+        "G22895C",
+        "T22896A",
+        "G22898A",
+        "A22910G",
+        "C22916T",
+        "T22917G",
+        "T22926C",
+        "T22928C",
+        "T22942A",
+        "G22992A",
+        "C22995A",
+        "T23005A",
+        "G23012A",
+        "T23018C",
+        "T23019C",
+        "A23055G",
+        "A23063T",
+        "T23075C",
+        "G23222A",
+        "C23271T",
+        "A23403G",
+        "C23423T",
+        "C23525T",
+        "T23599G",
+        "C23604G",
+        "C23625T",
+        "C23854A",
+        "G23948T",
+        "C24378T",
+        "A24424T",
+        "T24469A",
+        "C24990T",
+        "C25000T",
+        "C25207T",
+        "C25584T",
+        "A25758T",
+        "C26060T",
+        "C26270T",
+        "G26529C",
+        "C26577G",
+        "A26610G",
+        "C26681T",
+        "G26709A",
+        "C26833T",
+        "C26858T",
+        "A27259C",
+        "G27382C",
+        "A27383T",
+        "T27384C",
+        "C27807T",
+        "T27810C",
+        "A28271T",
+        "C28311T",
+        "G28881A",
+        "G28882A",
+        "G28883C",
+        "C28958A",
+        "A29510C"
+    ],
     "LD.1": [
         "C241T",
         "T670G",

diff --git a/freyja/data/usher_barcodes.feather b/freyja/data/usher_barcodes.feather