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Sketchlib 1.7.4

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@johnlees johnlees released this 22 Jul 16:23
· 238 commits to master since this release
1d31abf

New features:

  • Sketching kernel overhaul: should be faster, and supports read datasets larger than the device memory size (#63 #64)
  • Increase the size of the countmin table on GPUs to 2^30 columns, takes up about 30% of a 3090's memory (#64)
  • Better progress meter for read sketching (#64)
  • Save whether the DB was calculated using the reverse complement strand (#65)

Bug fixes:

  • Fix indices for reference vs query distance calculations, hit when reaching ~100k queries (#64)
  • If sketching craps out early, save the successful sketches up until that point to the HDF5 DB without corrupting it, so it can be joined later. (#64)

Other:

  • Refactor the CUDA code a bit, putting classes into their own files. (#64)