Create tools for SV VCF cleaning #5300

Job	Run time
Validate generated WDLs using womtools	13m 49s
build and push gatk docker to artifacts	11m 50s
check if the environment has privileges	1s
Validate script WDLs using womtools	45s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	23m 32s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	26m 39s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	25m 24s
WDL test RUN_M2_WDL on cromwell	16m 44s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	12m 53s
Java 17.0.6+10 build and test cloud	17m 40s
Java 17.0.6+10 build and test integration	28m 16s
Java 17.0.6+10 build and test unit	17m 32s
Java 17.0.6+10 test on docker integration	31m 23s
Java 17.0.6+10 test on docker unit	18m 47s
Java 17.0.6+10 test on docker variantcalling	26m 39s
Java 17.0.6+10 test on docker conda	23m 56s
	4h 55m 50s

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