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Create tools for SV VCF cleaning #5300

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Create tools for SV VCF cleaning

Create tools for SV VCF cleaning #5300

Triggered via pull request May 1, 2025 15:24
@kjaisinghkjaisingh
synchronize #8996
kj_sv_cleanvcf
Status Success
Total duration 43m 30s
Artifacts 8

gatk-tests.yml

on: pull_request
check if the environment has privileges
0s
check if the environment has privileges
build and push gatk docker to artifacts
11m 50s
build and push gatk docker to artifacts
Validate script WDLs using womtools
45s
Validate script WDLs using womtools
Validate generated WDLs using womtools
13m 49s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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Annotations

7 errors
Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker conda
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker variantcalling
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth
Java 17.0.6+10 test on docker integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions: https://github.com/google-github-actions/auth

Artifacts

Produced during runtime
Name Size Digest
gatkDockerImage Expired
2.21 GB
sha256:bfc4ddcda297900d676f24821b92c85b5014416aecdab1d0fcace4414cc902f2
test-results-17.0.6+10-cloud Expired
81.9 KB
sha256:626bbc7bfc59cf62670fd9b8d8de0261d47a614e3f0652fef9ebe18c09da2d6f
test-results-17.0.6+10-integration Expired
573 KB
sha256:7fe2ccf0f626c774763623322a4a26592e58568aa2d55dcfbf6f72aa9472f703
test-results-17.0.6+10-unit Expired
5.06 MB
sha256:e2352376c9e7323ea22eb0d56d5f89ae79d6d915e8518f3b912608623c663e17
test-results-docker-17.0.6+10-conda Expired
53 KB
sha256:0f0110f502d0a67606d9a863cafca8f5807ac819d7d7dc845111d12f88d7480f
test-results-docker-17.0.6+10-integration Expired
576 KB
sha256:cb285b2b9fde52f4b37a4cfecb13282fe196a4960768d73be5d0e65b7ff151bb
test-results-docker-17.0.6+10-unit Expired
4.92 MB
sha256:6a29b006d71ebf7a1275466c72323b5aca393aa1fc63870362101857fe6f3821
test-results-docker-17.0.6+10-variantcalling Expired
31.8 KB
sha256:f183763a6082e06b6092727ff14be700f7ce6fe7635bfa8b0ca0638d2da17461