test yossi's fasta change #5373
lbergelsongatk-tests.yml
on: pull_request
check if the environment has privileges
0s
build and push gatk docker to artifacts
12m 5s
Validate script WDLs using womtools
1m 22s
Validate generated WDLs using womtools
14m 19s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
11 errors and 3 warnings
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Java 17.0.6+10 build and test unit
Process completed with exit code 1.
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Java 17.0.6+10 build and test unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 build and test cloud
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 build and test integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 build and test integration
Process completed with exit code 1.
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Java 17.0.6+10 test on docker unit
Process completed with exit code 1.
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Java 17.0.6+10 test on docker unit
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker conda
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker variantcalling
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker integration
The v0 series of google-github-actions/auth is no longer maintained. It will not receive updates, improvements, or security patches. Please upgrade to the latest supported versions:
https://github.com/google-github-actions/auth
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Java 17.0.6+10 test on docker integration
Process completed with exit code 1.
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WDL test RUN_M2_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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WDL test RUN_CNV_SOMATIC_WDL on cromwell
Error: Path Validation Error: Path(s) specified in the action for caching do(es) not exist, hence no cache is being saved.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
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gatkDockerImage
Expired
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2.21 GB |
sha256:e7be3bdd91442df6e28bd1fc6e35b7c934c9f7dbb7a8808f1764656551292288
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test-results-17.0.6+10-cloud
Expired
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82.1 KB |
sha256:999d6355b38825c0093c0a73c34e81353d74c5aeb52728c197a4f82721c59943
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test-results-17.0.6+10-integration
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574 KB |
sha256:08fade1d35ab4906aa8d2fea13cf63a79ba48b363acb60bdacfad37df5c92c0f
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test-results-17.0.6+10-unit
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5.06 MB |
sha256:07f60311c346eb812d9efe94c815fd98195f2d9c2dbdb1d8930f572fa7cffae9
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test-results-docker-17.0.6+10-conda
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53 KB |
sha256:f4cf10c7193b8d5b36d912c8854fb77b853a6048bacab98218629e07bc0fe077
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test-results-docker-17.0.6+10-integration
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577 KB |
sha256:e8eb2cab09ca25d8b6af6f9dcb2fb7df141a60672854297043ce7cea7cfcf165
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test-results-docker-17.0.6+10-unit
Expired
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4.92 MB |
sha256:69b91781c442c469423d82c08325a4363f55e508068df6ecc9b07793935b4dae
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test-results-docker-17.0.6+10-variantcalling
Expired
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31.9 KB |
sha256:31cd41530f5b5672d9964ad7fa0ff561b8ec9456ebb9630e59ba129991c41df7
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