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Mutect2 doesn't call SNP despite high coverage and strong evidence unless forced with --alleles carrot-test-run-from-pr-comment #5633: Issue comment #9137 (comment) created by apraga
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BaseRecalibratorSpark fails with "java.lang.IllegalArgumentException: Table1 1,3 not equal to 88,3" carrot-test-run-from-pr-comment #5632: Issue comment #5854 (comment) created by Alexandra2022kzn
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WDL to create the participant mapping table [VS-1632] carrot-test-run-from-pr-comment #5631: Issue comment #9283 (comment) created by mcovarr
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Why CombineGVCFs so stupid to read the whole g.vcf when giving --intervals? carrot-test-run-from-pr-comment #5630: Issue comment #9238 (comment) created by yfarjoun
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VS-1743. Modify pgen .pvar file to use a new ID field format. carrot-test-run-from-pr-comment #5629: Issue comment #9273 (comment) created by gatk-bot
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Bump org.apache.zookeeper:zookeeper from 3.9.2 to 3.9.3 carrot-test-run-from-pr-comment #5628: Issue comment #9222 (comment) created by dependabot bot
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VS-1743. Modify pgen .pvar file to use a new ID field format. carrot-test-run-from-pr-comment #5627: Issue comment #9273 (comment) created by gatk-bot
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NVScoreVariants is not working in gatk4 4.6.2.0 (conda/docker) carrot-test-run-from-pr-comment #5626: Issue comment #9270 (comment) created by mggrami
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NVScoreVariants is not working in gatk4 4.6.2.0 (conda/docker) carrot-test-run-from-pr-comment #5625: Issue comment #9270 (comment) created by mggrami
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Mutect2: drop in SNV specificity/precision between v.4.1.8.1 and 4.1.9.0 carrot-test-run-from-pr-comment #5624: Issue comment #7921 (comment) created by ddrichel
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SIGSEGV when running gatk/4.6.0.0 carrot-test-run-from-pr-comment #5623: Issue comment #8988 (comment) created by gevro
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Add the variant id to the pgen output files carrot-test-run-from-pr-comment #5622: Issue comment #9263 (comment) created by gatk-bot
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Add the variant id to the pgen output files carrot-test-run-from-pr-comment #5621: Issue comment #9263 (comment) created by gatk-bot
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Add the variant id to the pgen output files carrot-test-run-from-pr-comment #5620: Issue comment #9263 (comment) created by gatk-bot
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Add the variant id to the pgen output files carrot-test-run-from-pr-comment #5619: Issue comment #9263 (comment) created by gatk-bot
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Add the variant id to the pgen output files carrot-test-run-from-pr-comment #5618: Issue comment #9263 (comment) created by gatk-bot
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How to use VariantRecalibrator ? carrot-test-run-from-pr-comment #5617: Issue comment #9262 (comment) created by zznx
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Add the variant id to the pgen output files carrot-test-run-from-pr-comment #5616: Issue comment #9263 (comment) created by gatk-bot
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Add the variant id to the pgen output files carrot-test-run-from-pr-comment #5615: Issue comment #9263 (comment) created by gatk-bot
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Add the variant id to the pgen output files carrot-test-run-from-pr-comment #5614: Issue comment #9263 (comment) created by gatk-bot
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How to use VariantRecalibrator ? carrot-test-run-from-pr-comment #5613: Issue comment #9262 (comment) created by zznx
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Add the variant id to the VariantContext for pgen writing. carrot-test-run-from-pr-comment #5612: Issue comment #9261 (comment) created by gatk-bot
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VS-1732. Modify Callset Statistics calculation to break up the chromosomes carrot-test-run-from-pr-comment #5611: Issue comment #9259 (comment) created by koncheto-broad
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Fix Hail cluster leakage [VS-1730] carrot-test-run-from-pr-comment #5610: Issue comment #9260 (comment) created by mcovarr
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Some tests fail: Shared object "libm.so.6" not found, required by "libgkl_utils11425681626488905546.so" carrot-test-run-from-pr-comment #5609: Issue comment #9257 (comment) created by gokalpcelik
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