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Update AbstractAlignmentMerger.java Warning Message (#1960)
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gokalpcelik authored May 13, 2024
1 parent cd216a7 commit c8b2c06
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/main/java/picard/sam/AbstractAlignmentMerger.java
Original file line number Diff line number Diff line change
Expand Up @@ -637,7 +637,7 @@ private void addIfNotFiltered(final Sink out, final SAMRecord rec) {
if (includeSecondaryAlignments || !rec.getNotPrimaryAlignmentFlag()) {
out.add(rec);
if (this.progress.record(rec) && crossSpeciesReads > 0) {
log.info(String.format("%d Reads have been unmapped due to being suspected of being Cross-species contamination.", crossSpeciesReads));
log.info(String.format("%d Reads have been unmapped due to suspicion of Cross-species contamination.", crossSpeciesReads));
}
}
}
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