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Error in running the pipeline

Status: Open.

#181 In cbg-ethz/V-pipe;

· inquisithustler opened on Jul 21, 2025

sra-tools command line tool: missing from Sars-Cov-2 Tutorial instructions

enhancement

help wanted

Status: Open.

#176 In cbg-ethz/V-pipe;

· gordonkoehn opened on Apr 25, 2025

HIV workflow error

Status: Open.

#168 In cbg-ethz/V-pipe;

· antoine4ucsd opened on Dec 28, 2024

Default deconvolution config is missing

help wanted

Status: Open.

#161 In cbg-ethz/V-pipe;

· GeertvanGeest opened on Sep 13, 2024

Workflow error from V-pipe dry run

help wanted

Status: Open.

#160 In cbg-ethz/V-pipe;

· robertsap opened on Sep 9, 2024

Setting VILOCA --windowsize parameter using v-pipe config file not possible

help wanted

Status: Open.

#157 In cbg-ethz/V-pipe;

· anikajohn opened on Jul 18, 2024

Problem in the deconvolution step

Status: Open.

#148 In cbg-ethz/V-pipe;

· Xuyen21 opened on Jan 8, 2024

Activating snv in sars tutorial leads to error

Status: Open.

#146 In cbg-ethz/V-pipe;

· schlaepferp opened on Jun 13, 2023

Missing input files for rule generate_web_visualization

Status: Open.

#139 In cbg-ethz/V-pipe;

· carlottaolivero opened on Mar 8, 2023

Error in rule hmm_align: HIV in Vpipe

Status: Open.

#138 In cbg-ethz/V-pipe;

· vfdiamante opened on Feb 2, 2023

hiv-tutorial fails with haplotype_reconstruction: savage, and SAVAGE command output is dumped into terminal instead of log

Status: Open.

#137 In cbg-ethz/V-pipe;

· Masterxilo opened on Nov 18, 2022

hiv-tutorial works with haploclique, but fails with predicthaplo

Status: Open.

#136 In cbg-ethz/V-pipe;

· Masterxilo opened on Nov 18, 2022