[Refactor] Migrate dependencies in docs/requirements.txt to pyproject.toml #31
Workflow file for this run
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# This workflow will install Python dependencies, run tests and black with a single version of Python | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: Python build | |
on: | |
push: | |
branches: | |
- main | |
# Temporary inclusion of master branch during default branch name transition | |
- master | |
pull_request: | |
branches: | |
- main | |
# Temporary inclusion of master branch during default branch name transition | |
- master | |
jobs: | |
build: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
os: [ubuntu-latest, macos-latest] | |
env: | |
OS: ${{ matrix.os }} | |
# This is needed to avoid a warning from SQLAlchemy | |
# https://sqlalche.me/e/b8d9 | |
# We can remove this once we upgrade to SQLAlchemy >= 2.0 | |
SQLALCHEMY_SILENCE_UBER_WARNING: "1" | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
#---------------------------------------------- | |
# ----- install & configure poetry ----- | |
#---------------------------------------------- | |
- name: Install Poetry | |
run: | | |
python -m pip install poetry | |
poetry config virtualenvs.in-project true --local | |
#---------------------------------------------- | |
# load cached venv if cache exists | |
#---------------------------------------------- | |
- name: Load cached venv | |
id: cached-poetry-dependencies | |
uses: actions/cache@v3 | |
with: | |
path: .venv | |
key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} | |
#---------------------------------------------- | |
# install dependencies if cache does not exist | |
#---------------------------------------------- | |
- name: Install dependencies | |
if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
run: poetry install --no-interaction --no-root --all-extras --without docs | |
#---------------------------------------------- | |
# install pycytominer | |
#---------------------------------------------- | |
- name: Install library | |
run: poetry install --no-interaction --only-root | |
#---------------------------------------------- | |
# run test suite and output coverage file | |
#---------------------------------------------- | |
- name: Test with pytest | |
run: | | |
poetry run pytest |