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Diamond summary script

enhancementNew feature or requestNew feature or request

Status: Open.

#33 In fischuu/Pipeline-Holoruminant-Meta;

· fischuu opened on Dec 22, 2025

Something odd with magscot_run

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#32 In fischuu/Pipeline-Holoruminant-Meta;

· fischuu opened on Dec 21, 2025

Benchmarking description added to readme and implementing it for every step

Status: Open.

#28 In fischuu/Pipeline-Holoruminant-Meta;

· JSkar opened on Dec 9, 2025

Zipping files for Diamond output

bugSomething isn't workingSomething isn't working

Status: Open.

#26 In fischuu/Pipeline-Holoruminant-Meta;

· fischuu opened on Nov 28, 2025

emapper / annotation partially complete / snakemake doesn't check

Status: Open.

#20 In fischuu/Pipeline-Holoruminant-Meta;

· JeremyTournayre opened on Nov 17, 2025

Escalation system - check how the job is killed

Status: Open.

#16 In fischuu/Pipeline-Holoruminant-Meta;

· JeremyTournayre opened on Nov 5, 2025

Parallel (instead of sequential) decontamination

enhancementNew feature or requestNew feature or request

Status: Open.

#12 In fischuu/Pipeline-Holoruminant-Meta;

· fischuu opened on Oct 3, 2025

Several co-assemblies per sample

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#5 In fischuu/Pipeline-Holoruminant-Meta;

· fischuu opened on Jul 3, 2024

Database setup should be placed into an own rule

enhancementNew feature or requestNew feature or request

Status: Open.

#1 In fischuu/Pipeline-Holoruminant-Meta;

· fischuu opened on Jul 3, 2024