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Misc. fixes for newer versions of Xarray

These fixes fall into three categories:

  1. Xarray's groupby no longer supports squeezing out size 1 dimensions.
    Instead, I've set squeeze=False and added explicit calls to .squeeze().
  2. Slight differences in dtypes/rounding (I believe these are indirectly due to
    changes required for NumPy 2.0 compatibility).
  3. Various cases where type checking is stricter (I've added type: ignore to
    these lines)

These fixes fall into three categories:

1. Xarray's groupby no longer supports squeezing out size 1 dimensions.
   Instead, I've set `squeeze=False` and added explicit calls to `.squeeze()`.
2. Slight differences in dtypes/rounding (I believe these are indirectly due to
   changes required for NumPy 2.0 compatibility).
3. Various cases where type checking is stricter (I've added `type: ignore` to
   these lines)

PiperOrigin-RevId: 671238424
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