SpatialPerturb

Toolkit for combining Spatial Transcriptomics with Perturb-seq workflows — signatures, label transfer, spatial scoring, and graph/structure analysis.

Install

pip install SpatialPerturb
# or with GNN extras:
pip install 'SpatialPerturb[gnn]'

Quick start

import spatialperturb as sp

print(sp.__version__)

CLI:

SpatialPerturb version

Development

python -m pip install --upgrade build twine
python -m build
twine upload --repository testpypi dist/*

Citation

Please cite the package if you find it useful. See CITATION.cff.