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Great, approved for merge after #426. |
We use the term "hit" both for - a query strobemer successfully looked up in the index - a locus on the query paired with a locus on the reference (this type of hit is merged into NAMs) I think choosing the name for the latter to be "match" makes sense because the M in NAM stands for "match". That is, we can then say that we merge multiple overlapping matches into non-overlapping, approximate matches (=NAMs). The flow would then be: hit -> match -> NAM.
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After merging most of #426, this PR no longer conflicts, so merging. |
rebjannik
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May 17, 2025
Rename Hit struct to Match
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We use the term "hit" both for
I think choosing the name for the latter to be "match" makes sense because the M in NAM stands for "match". That is, we can then say that we merge multiple overlapping matches into non-overlapping, approximate matches (=NAMs).
The flow would then be: hit -> match -> NAM.
Marking as draft because this should only be merged after #426 as it will otherwise cause conflicts.