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22 Open 17 Closed
22 Open 17 Closed
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Issues list

Memory for more than 50 sequences with length of 250K
#118 opened Aug 4, 2024 by Yaoyx
AssertionError when run tf-modisco
#117 opened Jul 19, 2024 by Jie-Lii
1
Average Contribution Score
#116 opened Jul 17, 2024 by shunyasanuma
1
ValueError: cannot reshape array of size 0 into shape (0,newaxis)
#115 opened Apr 9, 2024 by Yaoyx
1
Mean-normalize hypothetical contributions
#113 opened Feb 21, 2024 by FelixWaern
1
TypeError with PCA Initialization in TensorFlow-Modisco: Seeking Advice for Sparse Matrix Handling
#111 opened Jan 19, 2024 by JoneSu1
1
Confusion with negative motifs
#109 opened May 31, 2023 by PelFritz
4
Doesn't work for the the sequences in variable lengths.
#107 opened Mar 31, 2023 by ruizhideng
2
Any considerations for RNA motif discovery because of Coarse-Grained Affinity Matrix Computation?
#105 opened Jul 27, 2022 by AidenSb
1
Which settings of modisco should I change
#104 opened Jun 30, 2022 by PelFritz
Comparing motifs from TFMoDisco and other methods?
#103 opened Jun 21, 2022 by sandraleebatista
1
TypeError: '<=' not supported between instances of 'list' and 'float'
#102 opened Apr 22, 2022 by mhorlacher
4
question about hypothetical contribs + "cannot do a non-empty take from an empty axes" error
#95 opened Sep 10, 2021 by Sakurag1l
9
AssertionError : assert len(new_pattern)==1 in modisco/aggregator.py
#89 opened Mar 26, 2021 by ofiryaish
3
Bug in checking weights sum to 1
#81 opened Feb 1, 2021 by BeyondTheProof
1
AssertionError: 50 1 in assert len(fwd)==len(rev),str(len(fwd))+" "+str(len(rev))
#74 opened Dec 6, 2020 by ofiryaish
4
Unexpected keyword argument 'kmer_len' in constructor call of modisco.tfmodisco_workflow.seqlets_to_patterns.TfModiscoSeqletsToPatternsFactory
#71 opened Oct 3, 2020 by ofiryaish
1
memory usage bottleneck
#49 opened Nov 22, 2019 by hy395
4
NaN or High value for dtype float32
#33 opened Oct 25, 2018 by TommyJW
4
Support for win32
#32 opened Oct 18, 2018 by TommyJW
6
tomtom query edge case in fetch_tomtom_matches
#25 opened Aug 31, 2018 by mhfzsharmin
self.seqlet_aggregator return empty list
#6 opened Jun 14, 2018 by s6juncheng
3
ProTip! Updated in the last three days: updated:>2024-11-16.