Add CLI tutorials for VCP #239
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KRCora
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Apr 15, 2025
Co-authored-by: Dannielle McCarthy <[email protected]>
dgmccart
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May 6, 2025
KRCora
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May 7, 2025
| "VSCyto3D is a 3D UNeXt2 model that has been trained on A549, HEK293T, and hiPSC cells using the Cytoland approach.\n", | ||
| "This model enables users to jointly stain cell nuclei and plasma membranes from 3D label-free images\n", | ||
| "to for downstream analysis such as cell segmentation and tracking." | ||
| "for downstream analysis such as cell segmentation and tracking without the need for human annotation of volumetric data" |
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@ziw-liu note missing period at the end of the sentence "... annotation of volumetric data."
KRCora
reviewed
May 7, 2025
| In the above example, we demonstrated how to use the VSCyto3D model | ||
| for virtual staining of cell nuclei and plasma membranes, which can rescue missing labels. | ||
| """ |
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@ziw-liu the tutorial is looking good! We just need to add the responsible use statement
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Add tutorials for HEK293T cells and zebrafish neuromast with CLI inference and 3D visualization using stackview.
https://colab.research.google.com/github/mehta-lab/VisCy/blob/vcp-cli-tutorials/examples/virtual_staining/vcp_tutorials/hek293t.ipynb