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31 Open 147 Closed
31 Open 147 Closed
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Issues list

Added stats.json output for ReadsQC (v1.0.13)
#283 opened Nov 7, 2024 by vlilanl
1 task
1
@mbthornton-lbl
1
get_token errors when testing on dev import priority-high
#280 opened Nov 4, 2024 by aclum
@mbthornton-lbl
2
MagsAnalysis import automation when no bins present import
#276 opened Oct 18, 2024 by aclum
add linkml validation to unit tests where nmdc-schema database records are made
#270 opened Oct 10, 2024 by aclum
@mbthornton-lbl
berkeley add data_category to workflow automation records berkeley-rollout-post-mvp-eligible does not block rolling out the MVP, still targeted for Oct
#266 opened Oct 8, 2024 by aclum
@mbthornton-lbl
add tests for validating json records against nmdc-schema testing
#261 opened Oct 1, 2024 by aclum
1
import automation logic when import files don't have upstream records. import
#260 opened Oct 1, 2024 by aclum
annotation update for JGI annotation 5.3
#249 opened Sep 16, 2024 by aclum
1 of 3 tasks
update author list of pyproject.toml
#238 opened Aug 20, 2024 by aclum
add code to generate input.jsons for steps defined in workflows-mt.yaml backlog
#230 opened Aug 6, 2024 by aclum
@mbthornton-lbl
5
Create test instance of each workflow that leaverage Berkeley schema & new runtime backlog
#220 opened Jul 24, 2024 by mbthornton-lbl
10 tasks
@mbthornton-lbl
4
Add some tracing logic to help debug things enhancement New feature or request
#207 opened Jul 2, 2024 by scanon
MG Annotation v1.1.1
#205 opened Jul 1, 2024 by kaijli
Add md5sum checks for data copied to results folder
#192 opened Jun 13, 2024 by aclum
@mbthornton-lbl
1
Implement JAWS API wrapper
#190 opened Jun 12, 2024 by mbthornton-lbl
@mbthornton-lbl
metaAssembly output update (v1.0.5)
#189 opened Jun 11, 2024 by vlilanl
3 tasks
@scanon @mbthornton-lbl
1
Data QC: workflow_execution_has_input_data_objects
#176 opened May 16, 2024 by mbthornton-lbl
5
Document the scheduler script documentation Improvements or additions to documentation
#146 opened May 2, 2024 by eecavanna
Update README and code documentation for JGI file staging
#84 opened Apr 9, 2024 by mbthornton-lbl
@mbthornton-lbl
automation support for long read assembly
#82 opened Mar 29, 2024 by aclum
@scanon @kaijli @vlilanl
Fix error in jgi_file_metadata.py
#76 opened Mar 20, 2024 by mbthornton-lbl
@mbthornton-lbl
1
Add dexterity to version picking in scheduler
#62 opened Feb 21, 2024 by Michal-Babins
Test jaws with nmdc_automation integration
#53 opened Feb 7, 2024 by Michal-Babins
@mbthornton-lbl
Duplicate records with incorrect versioning - NEON backlog
#54 opened Dec 21, 2023 by aclum
1 of 3 tasks
@mbthornton-lbl
12
jgi_file_staging: test data fixtures get ValidationErrors from the Sample model
#33 opened Dec 8, 2023 by mbthornton-lbl
ProTip! What’s not been updated in a month: updated:<2024-10-19.