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attribute("gene_count") returns NaN despite other sites of the same gene have non-zero counts

Status: Open.

#36 In mortazavilab/lapa;

· ChangqingW opened on Jul 11, 2025

Error "'DataFrame' object has no attribute 'append'"

Status: Open.

#35 In mortazavilab/lapa;

· ChangqingW opened on Jul 8, 2025

You shouldn't make this software dependency so difficult to configure

Status: Open.

#32 In mortazavilab/lapa;

· miaoxiannv opened on Jun 28, 2025

Can LAPA analyze Nanopore directRNA-seq data using RNA004 kit basecalled by Dorado?

Status: Open.

#31 In mortazavilab/lapa;

· Tesdhi opened on Jun 26, 2025

IntCastingNaNError( pandas.errors.IntCastingNaNError: Cannot convert non-finite values (NA or inf) to integer

Status: Open.

#30 In mortazavilab/lapa;

· niuyurui opened on Jun 12, 2025

lapa_correct_talon generates inconsistent corrected abundance and gtf files

Status: Open.

#29 In mortazavilab/lapa;

· MustafaElshani opened on Jan 28, 2025

ONT cDNA bam strand fix script

Status: Open.

#28 In mortazavilab/lapa;

· skudashev opened on Dec 18, 2024

ValueError: Invalid win_type gaussian

Status: Open.

#26 In mortazavilab/lapa;

· sunqiangzai opened on Jun 19, 2024

ValueError: new categories must not include old categories

Status: Open.

#25 In mortazavilab/lapa;

· nemitheasura opened on Feb 21, 2024

lapa_correct_talon ValueError: Samples in abundance file do not match with read_annot file.

Status: Open.

#24 In mortazavilab/lapa;

· MustafaElshani opened on Nov 19, 2023

Installation error

Status: Open.

#22 In mortazavilab/lapa;

· sagnikbanerjee15 opened on Aug 3, 2023

AssertionError: Can only do stranded operations when both PyRanges contain strand info

Status: Open.

#21 In mortazavilab/lapa;

· leli-li opened on Jul 13, 2023