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@msysbio

Lab of microbial systems biology

We study the structure and dynamics of microbial communities with systems biology methods.
README.md

Welcome to our github space

We mostly store supplementary material here. For projects, please see the github pages of lab members and the lab web page.

Popular repositories Loading

  1. .github .github Public

    msysbio-welcome

    2

  2. bacterial_growth bacterial_growth Public

    a database and an interface for bacterial growth data

    Python 1 3

  3. microbetagApp-public microbetagApp-public Public

    microbetag web service

    Python 1

  4. GutMicrobes2022 GutMicrobes2022 Public

    Supplementary Material for van de Velde et al. Gut Microbes 2022

    R

  5. BTRI_mucin_study_data BTRI_mucin_study_data Public

    Processed RNA-seq and fermentation data for "Starvation response strategies of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis and their impact on co-culture dynamics".

  6. BTRI_mucin_study_scripts BTRI_mucin_study_scripts Public

    Scripts for "Starvation response strategies of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis and their impact on co-culture dynamics".

    MATLAB

Repositories

Showing 8 of 8 repositories
  • PlasticDaphnia-ISMEJ Public

    Effects of microplastics on Daphnia-associated microbiomes in situ and in vitro

    msysbio/PlasticDaphnia-ISMEJ’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 29, 2024
  • microbetagApp-public Public

    microbetag web service

    msysbio/microbetagApp-public’s past year of commit activity
    Python 1 0 6 0 Updated Aug 13, 2024
  • bacterial_growth Public

    a database and an interface for bacterial growth data

    msysbio/bacterial_growth’s past year of commit activity
    Python 1 3 9 0 Updated Jul 10, 2024
  • PlasticEnzSearch Public
    msysbio/PlasticEnzSearch’s past year of commit activity
    Python 0 0 1 0 Updated May 31, 2024
  • BTRI_mucin_study_data Public

    Processed RNA-seq and fermentation data for "Starvation response strategies of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis and their impact on co-culture dynamics".

    msysbio/BTRI_mucin_study_data’s past year of commit activity
    0 0 0 0 Updated Feb 13, 2024
  • BTRI_mucin_study_scripts Public

    Scripts for "Starvation response strategies of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis and their impact on co-culture dynamics".

    msysbio/BTRI_mucin_study_scripts’s past year of commit activity
    MATLAB 0 0 0 0 Updated Feb 17, 2023
  • .github Public

    msysbio-welcome

    msysbio/.github’s past year of commit activity
    2 0 0 0 Updated Dec 20, 2022
  • GutMicrobes2022 Public

    Supplementary Material for van de Velde et al. Gut Microbes 2022

    msysbio/GutMicrobes2022’s past year of commit activity
    R 0 0 0 0 Updated Dec 20, 2022

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