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Update README.md
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dorado correct doesn't generate FASTQ files, so these two lines need to be changed to FASTA
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JWDebler authored Feb 6, 2025
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -500,10 +500,10 @@ dorado basecaller <model> pod5s/ --emit-moves > calls.bam
samtools fastq calls.bam > calls.fastq

# Apply dorado correct to a set of reads that can be used as input in an assembly program.
dorado correct calls.fastq > corrected.fastq
dorado correct calls.fastq > corrected.fasta

# Assemble the genome using those corrected reads
<some_assembler> --input corrected.fastq > draft_assembly.fasta
<some_assembler> --input corrected.fasta > draft_assembly.fasta

# Align original calls to the draft assembly
dorado aligner calls.bam draft_assembly.fasta > aligned_calls.bam
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