v0.3.1
Fixes
- [call-mods] Always change model to "explicit", dropped base modification probabilities should not be interpreted as canonical.
- [dmr, segment] Add pseudo-count to avoid -inf in HMM.
- [find-motifs] Fix crash in exhaustive search.
Adds
- [dmr] Allow specification of mod code-to-primary base on the command line with
--assign-code
.