6570 slurm job state query #6579
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Signed-off-by: tcutts <[email protected]>
Signed-off-by: tcutts <[email protected]>
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This patch adds support for the squeue --only-job-state option, which allows admins of recent SLURM versions to enable job state caching, and thereby reduce the RPC call load on SLURM. Because not all SLURM versions support this, and it does cause other filtering options (-p and -u) to be ignored, this has a new config parameter for the executor, onlyJobState, which defaults to "false" to stay the same as current nextflow behaviour.
I have written unit tests for the code, included in the PR, plus some docs for the users.
I have run the code on AstraZeneca's SLURM cluster, and it appears to behave correctly, at least for a very simple test workflow.