Skip to content

feat(ancestral): Add optional Nextclade GFF3 compatibility mode #2972

feat(ancestral): Add optional Nextclade GFF3 compatibility mode

feat(ancestral): Add optional Nextclade GFF3 compatibility mode #2972

Triggered via pull request November 9, 2024 03:07
Status Failure
Total duration 8m 33s
Artifacts 13

ci.yaml

on: pull_request
Matrix: pytest-cram
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
rebuild-docker-image
0s
rebuild-docker-image
Fit to window
Zoom out
Zoom in

Annotations

21 errors and 3 warnings
mypy
Process completed with exit code 1.
test (python=3.9 biopython=1.80)
Process completed with exit code 1.
test (python=3.11 biopython=1.80)
Process completed with exit code 1.
test (python=3.8 biopython=latest)
The job was canceled because "_3_9_1_80" failed.
test (python=3.8 biopython=latest)
Process completed with exit code 1.
test (python=3.9 biopython=latest)
The job was canceled because "_3_9_1_80" failed.
test (python=3.9 biopython=latest)
Process completed with exit code 1.
test (python=3.8 biopython=1.80)
The job was canceled because "_3_9_1_80" failed.
test (python=3.8 biopython=1.80)
The operation was canceled.
test (python=3.11 biopython=latest)
The job was canceled because "_3_9_1_80" failed.
test (python=3.11 biopython=latest)
The operation was canceled.
pathogen-repo-ci (mpox)
Process completed with exit code 1.
pathogen-repo-ci (mpox)
Process completed with exit code 1.
test (python=3.10 biopython=latest)
The job was canceled because "_3_9_1_80" failed.
test (python=3.10 biopython=latest)
The operation was canceled.
test (python=3.10 biopython=1.80)
The job was canceled because "_3_9_1_80" failed.
test (python=3.10 biopython=1.80)
The operation was canceled.
pathogen-repo-ci-v0 (seasonal-flu)
Process completed with exit code 1.
pathogen-repo-ci-v0 (tb)
Process completed with exit code 1.
pathogen-repo-ci (seasonal-cov)
Process completed with exit code 1.
pathogen-repo-ci (seasonal-cov)
Process completed with exit code 1.
pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
check-docs
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.

Artifacts

Produced during runtime
Name Size Digest
output-avian-flu Expired
96.7 KB
sha256:d3e3bb1d7d7649529de44922fdf22fa29e927a611fc11b2a30f896dd0850ee4a
output-dengue Expired
1.32 MB
sha256:a7629b55cf0d32e5cf1c229ef534c3d94fba3ccff9b539ed926f80c32dfcab5e
output-ebola Expired
111 KB
sha256:683f3122943f0fe437e2bb813c8968c684c846e26b348ddff2143d63b412c24b
output-lassa Expired
322 KB
sha256:5cb3731c2415841cf2b2def1d2670bf35e9986010ecc49cca8e81559613d6d51
output-measles Expired
3.87 MB
sha256:5283115898c6477b7ca58ac426f15edbd803a54036d602178bd377a67c8829cf
output-mpox Expired
12.3 MB
sha256:7e563e7c3c10b14eb047c18de2c0dfdc21eaf79e1190711fe70b867f62d4c292
output-mumps Expired
339 KB
sha256:e075d6979152e3ee1e6a11500b9bb3237331e213c1e4769338e4bce29578d4cb
output-ncov Expired
714 KB
sha256:67b914ae229b9e4fe365cc9e0bad5916f3e3bd305932c516823d8f88023c879a
output-rsv Expired
9.44 MB
sha256:43e5418631f1ff9ce8f7b9137178f2edbf6b16dfb4fec555a7a9f2be78e0aa64
output-seasonal-cov Expired
1.43 MB
sha256:eab3621ffb0ee248e68eaf807cc12625331b47e715e8856040fcc8282f9933f6
output-seasonal-flu Expired
22.8 KB
sha256:edbd55718c6d45f8ac3217f2ce77f297633563128bf8a318a396e7065b7856c4
output-tb Expired
4.96 MB
sha256:dbeef31cdd9b4a2f431d2c88e78550ce8f0faf188c4d5f48343e5f0bc4059678
output-zika Expired
749 KB
sha256:17690b883b7d23c7b422493fa372adc0a97965bad9ca35db6b5505ad9b5a602d