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Unhelpful error message from treetime when <code>augur ancestral</code> fails to load translation alignment

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

treetimeUpstream issue with treetimeUpstream issue with treetime

Status: Open.

#1919 In nextstrain/augur;

· misacodes opened on Oct 25, 2025

Optionally error if not all clades defined in clades.tsv are found in tree

enhancementNew feature or requestNew feature or request

Status: Open.

#1910 In nextstrain/augur;

· corneliusroemer opened on Oct 11, 2025

Uncaught error in <code>curate transform-strain-name</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#1906 In nextstrain/augur;

· corneliusroemer opened on Oct 10, 2025

Unhandled error in <code>curate apply-geolocation-rules</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#1904 In nextstrain/augur;

· corneliusroemer opened on Oct 10, 2025

Add docs for augur frequencies

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#1899 In nextstrain/augur;

· joverlee521 opened on Oct 6, 2025

subsample: Improve relative filepath search

enhancementNew feature or requestNew feature or request

Status: Open.

#1897 In nextstrain/augur;

· victorlin opened on Oct 3, 2025

Add validation of metadata

enhancementNew feature or requestNew feature or request

Status: Open.

#1896 In nextstrain/augur;

· huddlej opened on Oct 3, 2025

<code>XXXX-XX-XX</code> passes any date filter

bugSomething isn't workingSomething isn't working

Status: Open.

#1894 In nextstrain/augur;

· victorlin opened on Oct 1, 2025

align: Improve handling of duplicate reference sequence

enhancementNew feature or requestNew feature or request

Status: Open.

#1892 In nextstrain/augur;

· victorlin opened on Sep 22, 2025

subsample: Improve --output-log

enhancementNew feature or requestNew feature or request

Status: Open.

#1886 In nextstrain/augur;

· victorlin opened on Sep 16, 2025

Unclear deprecation warning in export: "DEPRECATED: [config file] renaming coloring 'authors' to 'author'"

easy problemRequires less work than most issuesRequires less work than most issues

good first issueA relatively isolated issue appropriate for first-time contributorsA relatively isolated issue appropriate for first-time contributors

Status: Open.

#1882 In nextstrain/augur;

· corneliusroemer opened on Sep 7, 2025

merge: Support inner join

enhancementNew feature or requestNew feature or request

Status: Open.

#1873 In nextstrain/augur;

· victorlin opened on Jul 28, 2025