Clade definition inheritance #3697
jameshadfieldci.yaml
on: pull_request
Matrix: pytest-cram
mypy
54s
pyright
14s
build-docs
/
build
1m 11s
check-docs
45s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
rebuild-docker-image
0s
Annotations
22 errors and 18 warnings
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build-docs / build
Process completed with exit code 2.
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test (python=3.11 biopython=1.82)
Process completed with exit code 1.
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test (python=3.9 biopython=1.80)
Process completed with exit code 1.
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test (python=3.9 biopython=1.80)
The strategy configuration was canceled because "pytest-cram._3_11_1_82" failed
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test (python=3.11 biopython=1.80)
Process completed with exit code 1.
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test (python=3.11 biopython=1.80)
The strategy configuration was canceled because "pytest-cram._3_11_1_82" failed
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test (python=3.11 biopython=latest)
The operation was canceled.
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test (python=3.11 biopython=latest)
The strategy configuration was canceled because "pytest-cram._3_11_1_82" failed
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test (python=3.10 biopython=latest)
The operation was canceled.
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test (python=3.10 biopython=latest)
The strategy configuration was canceled because "pytest-cram._3_11_1_82" failed
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test (python=3.9 biopython=1.82)
The operation was canceled.
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test (python=3.9 biopython=1.82)
The strategy configuration was canceled because "pytest-cram._3_11_1_82" failed
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test (python=3.10 biopython=1.82)
The operation was canceled.
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test (python=3.10 biopython=1.82)
The strategy configuration was canceled because "pytest-cram._3_11_1_82" failed
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test (python=3.9 biopython=latest)
The operation was canceled.
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test (python=3.9 biopython=latest)
The strategy configuration was canceled because "pytest-cram._3_11_1_82" failed
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test (python=3.12 biopython=latest)
The operation was canceled.
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test (python=3.12 biopython=latest)
The strategy configuration was canceled because "pytest-cram._3_11_1_82" failed
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test (python=3.10 biopython=1.80)
The operation was canceled.
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test (python=3.10 biopython=1.80)
The strategy configuration was canceled because "pytest-cram._3_11_1_82" failed
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test (python=3.12 biopython=1.82)
The operation was canceled.
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test (python=3.12 biopython=1.82)
The strategy configuration was canceled because "pytest-cram._3_11_1_82" failed
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci-v0 (ebola)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci-v0 (tb)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-07-03-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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output-avian-flu
Expired
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97.7 KB |
sha256:cf17328f5998daa4d78a3766074d6e4802ef3f5bf68e9603a52cce342300387d
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output-dengue
Expired
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1.22 MB |
sha256:9a556b93fb20ef118acfcdf8178aac52260fd702ab54c6559e4a12d8bfe205df
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output-ebola
Expired
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112 KB |
sha256:9595adecad5dcb68b96b6a8d355f59e0785b4b0d84dc7c1682502c0057c6cfd2
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output-lassa
Expired
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1.51 MB |
sha256:51f7e1267836c85db0ef2a676a20c3c0686d2d6b74c0fc961264910057cbbd34
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output-measles
Expired
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3.88 MB |
sha256:b08532a714467367c2d177ea96d1d674bb98898254f07b271513ffe9c2557476
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output-mpox
Expired
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12.7 MB |
sha256:e44026795662924aa815410590a60f2708b12dcf71cab3b5f8024af7a3993e9f
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output-mumps
Expired
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298 KB |
sha256:df392bbc4a9d3ce95688caac50f59a0a5a93b02a773ad3821ea48910f8ba2d47
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output-ncov
Expired
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712 KB |
sha256:1b658c6c225badfddfb86dcea06fc33f95b5b86d32cd73e9ae0f801acf88c88a
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output-oropouche
Expired
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567 KB |
sha256:bef7e219d4e8b6b0d86477f90c318b5a9c8e8b4240fd3216dc0a94508a67c1db
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output-rabies
Expired
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5.25 MB |
sha256:c98332cbc1b8b9f900722b2dcb4cf88b9d61d35d8435b30aa9d4a4a7f5ea4d8a
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output-rsv
Expired
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9.88 MB |
sha256:f0e041515ea61d438cd094cdb09eaaa3953f0f8cb0c2be61fb7f50478b52b4a5
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output-seasonal-cov
Expired
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2.33 MB |
sha256:e3a939d3cfea58b2e61ad96a8691e813f63746bfa54079895f55ed5c465a8de6
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output-seasonal-flu
Expired
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55.3 KB |
sha256:d54489b2285effc256acce0cd07bfdfd1a1ddfe501066d3457738a51d4cd439f
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output-tb
Expired
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5.03 MB |
sha256:f4ba0101c4700c5dae29a7c4483fd2c4e2528f0d92ad668dcf005d1c4a8255ca
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output-wnv
Expired
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187 KB |
sha256:f0c909e8e32e183671dc2fefdb754f78c6968bb4c45b33151773facd28603a2a
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output-yellow-fever
Expired
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2.11 MB |
sha256:19fb55f0049309db1741a1de6b2350fc103c45a9e2fdc02afd8884519bb0ae44
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output-zika
Expired
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791 KB |
sha256:02e6b58d80509214163dd7c510559555b3de17f032ab3cacf3bc408b8a479809
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