refine: warn if doing timetree and there's apparent mismatch between metadata and sequence ids #3959
corneliusroemerci.yaml
on: pull_request
Matrix: pytest-cram
mypy
58s
pyright
27s
build-docs
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build
1m 13s
check-docs
45s
check-subsample-config-schema
46s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
0s
rebuild-docker-image
0s
Annotations
36 errors and 3 warnings
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build-docs / build
Process completed with exit code 2.
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test (python=3.9 biopython=1.82 numpy=latest)
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test (python=3.9 biopython=1.85 numpy=latest)
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test (python=3.9 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.9 biopython=1.80 numpy=latest)
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test (python=3.9 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.10 biopython=1.85 numpy=latest)
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test (python=3.10 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.10 biopython=1.80 numpy=latest)
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test (python=3.10 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.11 biopython=1.80 numpy=latest)
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test (python=3.11 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.10 biopython=1.82 numpy=latest)
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test (python=3.10 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.11 biopython=1.82 numpy=latest)
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test (python=3.11 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.11 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.10 biopython=latest numpy=latest)
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test (python=3.10 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.12 biopython=1.82 numpy=latest)
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test (python=3.12 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.13 biopython=1.85 numpy=latest)
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test (python=3.13 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.12 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.12 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.13 biopython=latest numpy=latest)
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test (python=3.10 biopython=1.80 numpy=1.26.4)
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test (python=3.13 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.10 biopython=1.80 numpy=1.26.4)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.11 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.12 biopython=latest numpy=1.26.4)
The operation was canceled.
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test (python=3.12 biopython=latest numpy=1.26.4)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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output-avian-flu
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98.2 KB |
sha256:a71ebddced2f39c35e4d6ccccab21ca3b3c1cf0d7c07f4bc332502681a26d207
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output-dengue
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435 KB |
sha256:39e414ef21476192cb62e167668f8f399aa360f9877384c20d09548aee153155
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output-lassa
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1.51 MB |
sha256:13307353afecc4fe9409f88b56980461fe54480a4da4f19771a208e15d6e8e99
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output-measles
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3.91 MB |
sha256:5dca0edc456ad11f7fe3a07d4ebb26b4c1769130694dba1cddd15e3fec79f3d5
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output-mpox
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14.4 MB |
sha256:2448aa254d376dcab6c5ca788de01aab2984d97981623d794c6ea200c1e3c4f1
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output-mumps
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310 KB |
sha256:0f189760310522a039b26785eedb8bacd28a5cb867f872b00dc57b9478122781
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output-ncov
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718 KB |
sha256:b8e47d6c99ec4675941aa380acfa484a01f3d86cfbe40947f038ad338030a795
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output-oropouche
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607 KB |
sha256:948384f2a0a82a21c98b2c9f315fa12bc0c8fc6254096cb7722109a025b00c0b
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output-rabies
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5.27 MB |
sha256:235d1b605fdac216cffff72c6af8f358588ad5ec2263b4bf533905ec0cb19d92
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output-rsv
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1.2 MB |
sha256:6c167da5ec26651a07634c011f06c2a89162d5f55a6ed97f9ecce5b96db314bb
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output-seasonal-cov
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2.47 MB |
sha256:3e49316e272f712dc98376b46ef52862df642a26fd644fb0428930c6a33108a2
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output-seasonal-flu
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60.3 KB |
sha256:c2236c0903f38a3cdcbedc2ddc18383359952c8c3f73ba4e00dc8c2772d7c474
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output-tb
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5.03 MB |
sha256:cce2a425c8e5af28c1d27c787cade2ba999ffe6435453626f38ec1c530e5ee4a
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output-wnv
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241 KB |
sha256:b0f4a5359f4f686e123165c105bde077fb41bf08bfe1b13e5c001256f0139acb
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output-yellow-fever
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2.13 MB |
sha256:17e9469f763a077f78e5fa875737ce19953e29990754c0e32c31741864b87af7
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output-zika
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807 KB |
sha256:79bb1d4288023cd1cfb6800ef4876a717d26edad47b93fbbaa7e0480dd81b777
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