refine: warn if doing timetree and there's apparent mismatch between metadata and sequence ids #3960
corneliusroemerci.yaml
on: pull_request
Matrix: pytest-cram
mypy
55s
pyright
26s
build-docs
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build
1m 17s
check-docs
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check-subsample-config-schema
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Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
0s
rebuild-docker-image
0s
Annotations
36 errors and 3 warnings
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build-docs / build
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test (python=3.9 biopython=1.82 numpy=latest)
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test (python=3.9 biopython=1.80 numpy=latest)
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test (python=3.9 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.10 biopython=1.80 numpy=latest)
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test (python=3.10 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.11 biopython=1.85 numpy=latest)
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test (python=3.11 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.9 biopython=1.85 numpy=latest)
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test (python=3.9 biopython=1.85 numpy=latest)
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test (python=3.12 biopython=1.85 numpy=latest)
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test (python=3.12 biopython=1.85 numpy=latest)
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test (python=3.10 biopython=1.80 numpy=1.26.4)
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test (python=3.10 biopython=1.80 numpy=1.26.4)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.10 biopython=1.82 numpy=latest)
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test (python=3.10 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.11 biopython=1.82 numpy=latest)
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test (python=3.11 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.12 biopython=latest numpy=1.26.4)
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test (python=3.11 biopython=1.80 numpy=latest)
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test (python=3.12 biopython=latest numpy=1.26.4)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.11 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.11 biopython=latest numpy=latest)
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test (python=3.11 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.13 biopython=1.85 numpy=latest)
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test (python=3.13 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.12 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.10 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.12 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.13 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.13 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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test (python=3.10 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_9_1_82" failed
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
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output-avian-flu
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98.2 KB |
sha256:35ec944c1c8c36f7e54a4890bddfbd216cbbc2322d16835c8ca64950e490fc5e
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output-dengue
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435 KB |
sha256:b84e39f2d81408cda2f9fd62409bd947adcefb0cf70ecf63114c5245fdffda34
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output-lassa
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1.59 MB |
sha256:353b10f817df2c61c6220a6c8251d3d290c85cd982b3769c919292ba3bc5069d
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output-measles
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3.91 MB |
sha256:1f1f7e979e40485ad2af0229c3866ee3e232d9734214e1c22f4658a8c0226ed3
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output-mpox
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14.4 MB |
sha256:4f25d91271d05804cb191e90028f0f8f4c19965d652f40775651a74c4c361264
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output-mumps
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312 KB |
sha256:e8c09db8c5acf6b4bad603f1a52086bdc502f1434d586d7584ca06606bc2832d
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output-ncov
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716 KB |
sha256:388c74eb8082aace8aae80249c838c5e363a215ec5b06f24ce844c9a9347dcea
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output-oropouche
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589 KB |
sha256:7939b2e23c0af2aa44fad42fd6a5376d313c26969d8d06c83693f552913a1d6a
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output-rabies
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5.27 MB |
sha256:0b8a0ab084536dba01f25139a49a23bd9921952bbcc17908174d58bd90a812c8
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output-rsv
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1.2 MB |
sha256:e2b86ee4bce57977f7f1dc35eaa157933992c57b8c4cecf861b6879c1b12d24a
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output-seasonal-cov
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2.47 MB |
sha256:a87fda7582ce5080d17d799e5732063df755e851faf43657f8f15156c4c0bb2c
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output-seasonal-flu
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60.3 KB |
sha256:826e5813a41722c1e9963ba00238a81107254809d19aaf9536d48e8cd197911f
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output-tb
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5.03 MB |
sha256:f82ebc0397b7ef1860e0d4a311c3f5aa49d5463da2f1580238dda4cffb386548
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output-wnv
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241 KB |
sha256:5b7aef6d18b693da08f1115bd4919d492b1ba79c51eaa2edde1d6ee34f06badf
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output-yellow-fever
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2.13 MB |
sha256:d966554bcfe025a3d3b2dd17fe894df190dff7d9d095356b82276bab627beab5
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output-zika
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807 KB |
sha256:c462c260703c1eaa31e07950f0e560165f3f6dabf4f3a63d92d618fc7687e4a8
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