CI #3971
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
54s
pyright
25s
build-docs
/
build
1m 13s
check-docs
39s
check-subsample-config-schema
47s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
18s
rebuild-docker-image
0s
Annotations
1 error and 19 warnings
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build-docs / build
Process completed with exit code 2.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (tb)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-11-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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189 KB |
sha256:b98338aae4d6c67250607688f945be5ed4caf39f6ed2a5875bd7e48e965ec8ce
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output-avian-flu
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98.2 KB |
sha256:f29973feb80b2705de18adc7709abeb35f13a63dfc63fc6d9717b9f2948680be
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output-dengue
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435 KB |
sha256:dca22aa9536dfcd235b906ee81c4a8ea618655712525b2789f1467c09edfa196
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output-lassa
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1.52 MB |
sha256:54b66b20e62c99f5cf947e4eb94fbb9e2528f9a2c6a9c50803c185468b2b40f0
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output-measles
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3.91 MB |
sha256:e2a49794bebecb40689cef439c389f81cf82b5295ab3f7e5062fed157d20eea1
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output-mpox
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14.4 MB |
sha256:97f0c31a6469d7c723ad1161a281e2fdb5b04c03132c7534d0d339aafe9b5ec8
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output-mumps
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310 KB |
sha256:7bd612a63200c92fc77bae5c8bff6d782042d535736b6af39407c7f08ff5a7c7
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output-ncov
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715 KB |
sha256:b443213a8797cac7bdd328eae14d07f29367031719287be1d20a89b4db4dd1e9
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output-oropouche
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588 KB |
sha256:69f016acc5edc1f10947b436cb6b528f1d4b42714719b7c3190a7c7000b43b51
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output-rabies
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5.27 MB |
sha256:deae6cb8f9f8dc51d12b6f1c9677db000836f9dc5b375fcd14e6bb56af13cb73
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output-rsv
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1.2 MB |
sha256:0bf2613ec90efb0282f028a05333fba00eaf15964498a8ef6b9a9da4c4472932
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output-seasonal-cov
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2.48 MB |
sha256:7dfd903b3616213951fde4e3d5ecf5346a21847de6031f9edf8b928a317f318f
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output-seasonal-flu
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60.3 KB |
sha256:0b68eb1ffac589f676ac0f8685ed7e329d43d6a9f71ad035895b6df013abf61e
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output-tb
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5.03 MB |
sha256:e1dc8411009bf4192b407d9458ca38476ea34992838af2828f9e77dc43daf04a
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output-wnv
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241 KB |
sha256:8438940ee4b3a9c051ae237df35e15520c185e21d07052a72e8c6bc81fd95bed
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output-yellow-fever
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2.12 MB |
sha256:343c9dcfd657c521413d145c9a2352691127ec7eafd99fe740c47ddcd7ed9b38
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output-zika
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807 KB |
sha256:f1cfcef382473835e1bd9fb49fa9abfd40cc7e666f47e8587c11ed896a5be52e
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