CI #3974
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
53s
pyright
22s
build-docs
/
build
1m 10s
check-docs
45s
check-subsample-config-schema
42s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
16s
rebuild-docker-image
0s
Annotations
1 error and 17 warnings
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build-docs / build
Process completed with exit code 2.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (tb)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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189 KB |
sha256:34658c6209a48b84b15ecb682d9f31c7ecd11d6a6358648b3e0ad54789a49641
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output-avian-flu
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98.2 KB |
sha256:4b25e0c4c7fda406c232efa4fc0afcc6e2b3584c505f7d4e62d2fa28519e2cae
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output-dengue
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435 KB |
sha256:37269f13f57f0f610590cddd20bb5fee6f43440a0f584c5e7c00b40fc5204aba
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output-lassa
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1.52 MB |
sha256:37543490ac656a3591e1aaaa57a05d02f3aea0747a41eadc8e21bc9078313c82
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output-measles
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3.91 MB |
sha256:012522e6418f7d0f70187d37640ba4396ed70eb98fa612bccf16b088fe33ee66
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output-mpox
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14.4 MB |
sha256:1f6414bd31da651620965493cd3aa940ec2c0886d3f074a6549850557c7c636d
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output-mumps
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310 KB |
sha256:00fd5327535e8d5c06d276c44a592709589047842c2eda7a4ec1f72e52d882a8
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output-ncov
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710 KB |
sha256:24439f007031842f6831a7522ba0ef0a399254aec677b5e1511cbf291ccc69a3
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output-oropouche
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588 KB |
sha256:96082c423a1c0e0135d7f13138751a06071f6d619b100e346a28bb183bcffa20
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output-rabies
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5.27 MB |
sha256:10afdc6f20df9d52bf28fba75baa22422f88681fb01552c02d74275818fc452d
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output-rsv
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1.2 MB |
sha256:85e79263ca6c378db9e54669d01b8abeacfd29493ff4309d2887ef863675ad43
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output-seasonal-cov
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2.46 MB |
sha256:ef8e2d1b7d3f843b42744bcb2dcb38331c8d06bcde53a8d2ad84d4c2255e6d12
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output-seasonal-flu
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60.3 KB |
sha256:78af36dd0c363baeef7bfc69955dc08c7c485d72097990d741e629663892db0b
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output-tb
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5.03 MB |
sha256:00ccdb6dbf99bd2c11121c002f2a34a918ac21bf3b2c153a000a751f098c76b5
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output-wnv
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241 KB |
sha256:ffc6f7e90500c837e173f252b06918c9bda459c92fc4e1fc024cc2096c22c9b3
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output-yellow-fever
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2.15 MB |
sha256:202704c3b1003eb9d64dd2d4cf681574915fd32fbe0c3258ebfb2b8a4cf9054a
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output-zika
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807 KB |
sha256:e00c1d09ef7a95cdbf9487da0ef2617261ce19c2ff4587838fd7ff6ddffa750f
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