Skip to content

translate: Error when translating sequence lengths indivisible by 3 #3984

translate: Error when translating sequence lengths indivisible by 3

translate: Error when translating sequence lengths indivisible by 3 #3984

Triggered via pull request October 13, 2025 23:38
Status Failure
Total duration 6m 55s
Artifacts 16

ci.yaml

on: pull_request
Matrix: pytest-cram
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
rebuild-docker-image
0s
rebuild-docker-image
Fit to window
Zoom out
Zoom in

Annotations

28 errors and 3 warnings
test (python=3.10 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.10 biopython=1.85 numpy=latest)
Process completed with exit code 1.
test (python=3.9 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.11 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.9 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.12 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.10 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.11 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.13 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.11 biopython=latest numpy=latest)
Process completed with exit code 1.
test (python=3.11 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.13 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.11 biopython=1.80 numpy=latest)
Process completed with exit code 1.
test (python=3.11 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
build-docs / build
Process completed with exit code 2.
test (python=3.10 biopython=1.80 numpy=1.26.4)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
test (python=3.10 biopython=1.80 numpy=1.26.4)
The operation was canceled.
test (python=3.10 biopython=1.80 numpy=1.26.4)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.10 biopython=latest numpy=latest)
The operation was canceled.
test (python=3.10 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.9 biopython=1.80 numpy=latest)
The operation was canceled.
test (python=3.9 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.12 biopython=latest numpy=1.26.4)
The operation was canceled.
test (python=3.12 biopython=latest numpy=1.26.4)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.12 biopython=latest numpy=latest)
The operation was canceled.
test (python=3.12 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
test (python=3.12 biopython=1.85 numpy=latest)
The operation was canceled.
test (python=3.12 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_85" failed
pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.

Artifacts

Produced during runtime
Name Size Digest
output-avian-flu
98.2 KB
sha256:4384b2a8d8666e3aa48ee0fd796d10115f2117c75a3745dd7780a5bcb554d44d
output-dengue
436 KB
sha256:44deb23afaf0e672cb6da48bd6a274281e45dda65d17d403a12848f09e86e416
output-lassa
1.52 MB
sha256:1aa3b3065d2b96544c624eb63a910aa3904d6f97406d6d86baebb3066ac98768
output-measles
3.91 MB
sha256:0ae62fbfab5cc90ae714accdc49e566c72de8e5b13753f74ffc74c6a360e5e9f
output-mpox
14.4 MB
sha256:fc57da38d8003d944c166135a4da49d08c196f7b647609ffb4abda714f912605
output-mumps
379 KB
sha256:8ea3672d3f4776437183cbdd08885b794335e6cb0d4bb360b514d5f435e91cac
output-ncov
715 KB
sha256:cb2085ac248000ec99d4337baeb44159626ea90fa1cb7c5eb9655fb7705cfb1c
output-oropouche
588 KB
sha256:38deb3c155b82f34acc9075763b886148346675f7bd80401cee8274af78d7ba7
output-rabies
5.27 MB
sha256:2e6ee02d7481328ede3c83127320f4755543f489f3cdd14faf6a0fa5301f07fb
output-rsv
1.2 MB
sha256:7a57b21678606d819460cbee2d71967655704ee3344721bcb1cf538488e8e9fc
output-seasonal-cov
2.49 MB
sha256:75b8e53467e81c474e34b81cafbc891a7bd219752baafa44e45aacecf6068c1b
output-seasonal-flu
60.3 KB
sha256:3a5ee4084d56f5bbaca764feb9d1b368ad5ef196fa0c059f9356c4d374134fe4
output-tb
5.03 MB
sha256:ba154ea7de80759a52f93293f9235cb1e54aec5930ad208857182c1d09bfa65b
output-wnv
241 KB
sha256:de4a25e81beffe3a1f3eb22eea37a14f604869363598d81cfbcd8bf18dbcc43f
output-yellow-fever
2.13 MB
sha256:bbfcf5a9a3a2c7b6cdd81aa631041694c524e174ee4847ad7a00957fbe81345d
output-zika
807 KB
sha256:0820047230056d2c28d6630b83716175344e71cfa1ecb5abce8a824babd3b0e9