CI #3987
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
52s
pyright
17s
build-docs
/
build
1m 22s
check-docs
46s
check-subsample-config-schema
43s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
14s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-14-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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189 KB |
sha256:8d8c585c83e323bf8d5e1055f0ef9f3d8414bba071b1adaec6362124a7b8893c
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output-avian-flu
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98.2 KB |
sha256:c698b3331511228a2ac918ebddf9e852172c9539b788fc3b3f6902acbddf7b3b
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output-dengue
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436 KB |
sha256:0040c7e549c461b69ca45f887b12ade0286eda55eedab94028356e560917d4a6
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output-lassa
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1.52 MB |
sha256:9e4adad474e17282f48cf2fb8c6e7ee86e3296a1d083fc7216d15ed7514da1ca
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output-measles
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3.92 MB |
sha256:36eaae30512ab800b661485572f1d05f2197bd9ddae9bd34fa0516c365d74504
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output-mpox
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14.4 MB |
sha256:9004ff6f72e9e7da6ff679d8c9274de6b42944e4816c0f0eabe4072cbeeff79b
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output-mumps
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379 KB |
sha256:bb3d06ec0ef0465d09a207bef391d2d890e75d700a8de84663d6e27c2652a411
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output-ncov
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714 KB |
sha256:b5edbe92dfd96d8afa069d8e1233c4220cd4fc390f5feb9ac722ca3e0914387c
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output-oropouche
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588 KB |
sha256:72f544f2b6a9c2f77022edcd0dfd677d51b7136bc20e47dbf7cea87b6114c2b9
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output-rabies
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5.27 MB |
sha256:e1c39d82e00603b91941e5d71a4745bcde5a8a4ab43b1b442f8c8c4d09e141b2
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output-rsv
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1.2 MB |
sha256:075a32ece9e56c1da5a92124cb98a9c53166c6976016550858eee2d7e779784d
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output-seasonal-cov
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2.41 MB |
sha256:f141ed8db0c568af3b4f3cbe719445c816b297e28d24d6f28ef905af15d3e933
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output-seasonal-flu
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60.3 KB |
sha256:366896cdc121802a1f9eecfb552003356c9452df48a7e461ce827ae3a7ae9d34
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output-tb
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5.03 MB |
sha256:aef09a99bd7928f473d33645d53ce91ee6f64ef9db2a71b59dd76d71ac512773
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output-wnv
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241 KB |
sha256:05684a8172fa7dd9f56f02d9693ff153872bbae989fcf2aeaf2fa352c29bc349
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output-yellow-fever
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2.13 MB |
sha256:8b007feedb82709723993af00e3fadea693d1972c4e035e6853c8525a3891139
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output-zika
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807 KB |
sha256:e87ba2c0b6490678ab88bc8e7cb6186bea03c941081099cb161ec68b41b9f9dc
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