CI #3988
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
56s
pyright
25s
build-docs
/
build
1m 42s
check-docs
43s
check-subsample-config-schema
43s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
16s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (tb)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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189 KB |
sha256:b52e9c314a548ab18b81e9ca12202cc54ad3b715178dee115bcb892d683f32d8
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output-avian-flu
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98.2 KB |
sha256:4365ff6c7d23abf0ca1b193aa590fe45f6948931ed3847be94c35c77e62e0353
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output-dengue
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436 KB |
sha256:72f17672a96586563004c7b0ed7da88a504e1d0c50e88b97cf5c808ced9d5245
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output-lassa
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1.52 MB |
sha256:4308d3b939233523f58657d0415cf28962e76758a2707437615dea5514f6f348
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output-measles
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4.02 MB |
sha256:33422b563f7528917dba9fab6e3353cd631535f1fa3e77fe0b6ec69a3c849864
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output-mpox
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14.4 MB |
sha256:b4fa1c070841ba04ac43482269594756c6688970143194d00b171f2eecb82f4a
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output-mumps
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379 KB |
sha256:60c13c83db3fc798d94f97c32c8f9b9d5a48903f6c3e8acb88c9a62169a7a62f
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output-ncov
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714 KB |
sha256:34d6f52273ffb66793bc9d058b835cdad0d1ab4811d75e9f31a5c93816df666b
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output-oropouche
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588 KB |
sha256:ad57d2d7b9e7dc56a520463add280b40f1216e2ebd0abcb120a9a8deb9070e12
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output-rabies
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5.28 MB |
sha256:5e2cdfd30751ade070a654ff578ec31c4fabfaaa5f80af17d46c6e85aa370267
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output-rsv
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1.2 MB |
sha256:6b7628dd270728402727c4f20a97f5b1003418fe4346e6f83160f3b7b2471fac
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output-seasonal-cov
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2.48 MB |
sha256:21ff9808bf9f9c7191951ec928dd74e0346c6074db6678f30762793d551b77ec
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output-seasonal-flu
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60.3 KB |
sha256:72403dbbb53418380d280d2b8706b59e586d0213d7697350f7be3b43256ddd56
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output-tb
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5.03 MB |
sha256:12dd4187ecead55403b744d072d02828d420bca8033f81554a49ed5877ffbf73
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output-wnv
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241 KB |
sha256:4a3c04bcffe93f594478bd66a82d54290c246dfd35a9b09ea457a2e9b6a7045f
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output-yellow-fever
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2.11 MB |
sha256:6ef57002169e7211b2b818ec47251c5437a441e31196db9c0478164edba92924
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output-zika
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807 KB |
sha256:b0bfe162abd06e626c6d002febc7983317a1d839fbc896732189c0ca5dcf7ab9
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