CI #3990
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
1m 6s
pyright
14s
build-docs
/
build
1m 30s
check-docs
46s
check-subsample-config-schema
45s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
13s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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189 KB |
sha256:17de659260476bfd68ffec20f983c9af854eed0f6a5da1edeb9223b710cc416f
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output-avian-flu
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98.2 KB |
sha256:3e64a9ec8dad7daec5d9ced88bbac9482592af7f38e9742c5744ed10c38d629f
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output-dengue
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435 KB |
sha256:d89345567c2c00009c83bcaf90b01baa4ff49d91005c98ed62603959b69f0fe6
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output-lassa
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1.52 MB |
sha256:a29e765e9296c783f6f7876f1369a9db2f9d9c4609ac9598fcc97f741bfbc1ca
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output-measles
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3.92 MB |
sha256:eefd1e70601fd81775709a7af2d98d0dbdcdc733af5e2e83bc9498663b414f75
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output-mpox
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14.4 MB |
sha256:df9db01624b646862401f974005b7a93822d185387ed91e8a6bff54b94ee7f2b
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output-mumps
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379 KB |
sha256:7b3c44b6c98eb6a84240731bba66e31b03681a3f0a40f22a114ff219c98e2c72
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output-ncov
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719 KB |
sha256:52976a41eb2db6ede54b01ce667f679a5ce6c01f3ac60b5c7faa00a236c48b91
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output-oropouche
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588 KB |
sha256:fcd9253db113217172392fff6462fbc1b589cce4611188b48100058800918a9f
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output-rabies
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5.28 MB |
sha256:596097adebd81fa05bc3871b6157da74b4c05be28a7d1918695c2fc45833eb9c
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output-rsv
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1.2 MB |
sha256:6a7950ab8574aae81c197834900dc65839ba29e24f420f6cf5ca8afa6ef87ffd
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output-seasonal-cov
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2.46 MB |
sha256:6b3d4c18d0f41b56385e283ead6d227a8d05c1be5dea9458abf551547ce66f03
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output-seasonal-flu
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60.3 KB |
sha256:b674a498f630005a3cad74f4711c3a3c62b4ef2bb5c0c0aac22221301955c42a
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output-tb
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5.03 MB |
sha256:9f2fe641a17f9a96b5660c7fe395a2d5ef72b9f13a5ea2efab99bc4a3cbfea02
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output-wnv
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241 KB |
sha256:03004443e2d05b947f8baf9cc29d778729368759210c4251087b5b2a877a2969
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output-yellow-fever
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2.12 MB |
sha256:cbbebd3540eb35a8e0f282e827ba1065bc1a4eab95b9985f246fa77a09bed25d
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output-zika
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807 KB |
sha256:e98661604b10609ae67e351d532bb11363c3ccb3c397e15f1c63ac6823f9f380
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