CI #3994
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
54s
pyright
26s
build-docs
/
build
1m 39s
check-docs
49s
check-subsample-config-schema
46s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
19s
rebuild-docker-image
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-17-linux-64-augur-args-30d39f4-root-dcc80ee-bin-d2edc1ba4d7ee2a8dabe8913906c08a42cf169bb65e50fc0d53a37b44e2bdd1e, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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189 KB |
sha256:b72a35659278ded3936bf75c72afd69aad58773aae85f26940c2c1dc5d4367ff
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output-avian-flu
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98.3 KB |
sha256:dbb0870857562379e90e0d5b095b9c1771e0664efb0c8c3ded9afae923565ae2
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output-dengue
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436 KB |
sha256:eeb915fcca5d6e6062bdde275f16292927a93dfc60b1dd0f5d05a2122c1cc3c2
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output-lassa
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1.51 MB |
sha256:54b06e6377bc096e60c42e11585c476debc077921478d4f5f320ca5e0c59c1ae
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output-measles
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3.91 MB |
sha256:d50d9be6c71ab29990e6c94354cb745e2dc648d1e4c922b2a98de3ab5599aa07
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output-mpox
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14.4 MB |
sha256:bfe4b7ea123114d690e16668083d3ba6b0d1652c1876e9363085b4c1edeaa78d
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output-mumps
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378 KB |
sha256:2b9d1411328d8262dbb9a1b9e03163e20e226a36b29c4054f17a430dab55a762
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output-ncov
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720 KB |
sha256:b6fe43c740072691294269be3943a3ed7f0da292a4691c0e14d3f6928f7b52ad
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output-oropouche
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588 KB |
sha256:82d6d8b551383ae7ec0f10e35a65c7807bebbc54f0a2ec52c6c61bc909f468ab
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output-rabies
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5.28 MB |
sha256:94e891b9bbc57070f403e8cca97f0e4ac96bd216ad3014d47360d9ad07c38420
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output-rsv
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1.2 MB |
sha256:4206ac4d0eb5756faf0dd9aef3dc7266ca766d21e5aaa0ee7f8ab88a40c07eac
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output-seasonal-cov
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2.47 MB |
sha256:4a5c7d7fb409542c90a90751f984731a9d1c2a5a3c6fb37e0cc70bf1cf1b4b1a
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output-seasonal-flu
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60.3 KB |
sha256:4b63d8de37a4a2df5339207ee45880988a2fa4b55d294fca49db9298f4a2ccee
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output-vcf-input-tutorial
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5.03 MB |
sha256:91bd08aff10a692a6931afc615fd93126f7862c69b1774724b6cc02ef78c9eb2
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output-wnv
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241 KB |
sha256:629a070757d62665f3c3f745efc5f4394815622231293cd7f6afb679bebcd42e
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output-yellow-fever
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2.11 MB |
sha256:c2a1139e52a6699043ea75b19f7ea01f1daab7200b3545a982bd7c52ade90fce
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output-zika
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807 KB |
sha256:3bff8d951546a52bd249d483701fb7ceccf952fef8a763838de9c44155d4c0f6
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