CI #3995
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
51s
pyright
18s
build-docs
/
build
1m 34s
check-docs
44s
check-subsample-config-schema
47s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
16s
rebuild-docker-image
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-18-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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189 KB |
sha256:b92351ed084f5516185195b9c14e0989ab426fe66e4a1d0c25cde05b6a280326
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output-avian-flu
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98.2 KB |
sha256:1c9f513cb95d1460bc779e2c918d4cd2f7bd748836de41b5a49fc5ab4e604bda
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output-dengue
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436 KB |
sha256:167746b9cb5d0a9cc4fcbbd13cb80602bed4dac9d2cc8991b6d4579b326a6c99
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output-lassa
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1.52 MB |
sha256:f83a7ee117ab6be91ee33c02f5cfb7205058a94544efc89500955847ae43e081
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output-measles
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3.91 MB |
sha256:a8a402aa9f30d7d1ffebbc154cb27aea75309f89a024e876872856d50a5ecd09
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output-mpox
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14.4 MB |
sha256:443fedf93d24a944acd610c653efe7abe24036490760e2d214518b6cf862cab6
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output-mumps
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378 KB |
sha256:821ec752071523a51747f75316b94666668bebff571ff21a4f18d66ce77419a5
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output-ncov
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714 KB |
sha256:cbf7050144682368a6cc1b1a630e31870176c43e8d4e030ad82f173476057b31
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output-oropouche
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588 KB |
sha256:95c8bd89a006c60c24f356af83bb8f27e8d38bf4aa2ca8b8fae2b7e29cfefc08
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output-rabies
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5.28 MB |
sha256:b5403cd6034033f00cd32cb03fca1867086ce98dc1fdb4850e6ed444f27dbc26
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output-rsv
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1.2 MB |
sha256:40fd8b4c88fb41d5c90db03b8e5009e3b85c320f74647fcdd931c386df6bc988
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output-seasonal-cov
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2.49 MB |
sha256:a2ecc06987cc5f3e898dd6dabb3838353fc0044cdd53f2adcb81d4854a612104
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output-seasonal-flu
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60.2 KB |
sha256:fa848afe4facc8d7e66e9574d144e93f29e5bdf50536b21bf24292ba75ab6845
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output-vcf-input-tutorial
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5.03 MB |
sha256:b6624d4a3d4b83b0b360608809ad1a2649ed120d48e817134a2a9c1a2987fdfb
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output-wnv
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241 KB |
sha256:2464a3081b8c815553c93e0655b58d221d3c3d4ccd65aab688b6119f1435d437
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output-yellow-fever
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2.13 MB |
sha256:f633fc87c75969eab816fbcbfcc1074862a93a39bc3556be650ab797455fe48a
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output-zika
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807 KB |
sha256:26e9161baa4f22932bccb8a1a5f66e5ef3e29bbf84194752d99e1f937c1a6313
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